RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PLGRKTQ9HBL7 147 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 PAK1IP1Q9NWT1 392 aaPredicted RBP21.01■□□□□ 0.95
SHMT1-202ENST00000352886 FZD4Q9ULV1 537 aa21.01■□□□□ 0.95
SHMT1-202ENST00000352886 GNG14A0A1W2PPG7 69 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 NUDT7P0C024 238 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF182P17025 639 aaPredicted RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 TSTA3Q13630 321 aaPredicted RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 SPIN4Q56A73 249 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 PRSS36Q5K4E3 855 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 EIF3MQ7L2H7 374 aaKnown RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 HORMAD1Q86X24 394 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SYTL1Q8IYJ3 562 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SYNPOQ8N3V7 929 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 VN1R2Q8NFZ6 395 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 CHTF18Q8WVB6 975 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 POF1BQ8WVV4 589 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 PREBQ9HCU5 417 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 MGAT4DA6NG13 374 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 KIAA0355O15063 1070 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 C1orf105O95561 183 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SRPRAP08240 638 aaKnown RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 EPCAMP16422 314 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 DNAJA1P31689 397 aaKnown RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 MAPK9P45984 424 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 TBPL1P62380 186 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 CDK5R2Q13319 367 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SIM2Q14190 667 aaPredicted RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 TCEAL5Q5H9L2 206 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 MED27Q6P2C8 311 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SLCO4C1Q6ZQN7 724 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 NRSN1Q8IZ57 195 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 VPS37AQ8NEZ2 397 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 HCAR2Q8TDS4 363 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 RAB2BQ8WUD1 216 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 ZNF480Q8WV37 535 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SAMD11Q96NU1 681 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 DGCR6LQ9BY27 220 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 TRIT1Q9H3H1 467 aaKnown RBP21■□□□□ 0.95
SHMT1-202ENST00000352886 C11orf49Q9H6J7 331 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 BTNL2Q9UIR0 455 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 SNX5Q9Y5X3 404 aa21■□□□□ 0.95
SHMT1-202ENST00000352886 C1orf226A1L170 272 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CTNNB1P35222 781 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 HPCAL1P37235 193 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CATSPEREQ5SY80 951 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 KDM4DQ6B0I6 523 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 PDE12Q6L8Q7 609 aaKnown RBP20.99■□□□□ 0.95
SHMT1-202ENST00000352886 C12orf40Q86WS4 652 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 ZC3H7AQ8IWR0 971 aaKnown RBP20.99■□□□□ 0.95
SHMT1-202ENST00000352886 NPAS3Q8IXF0 933 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CFAP206Q8IYR0 622 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 TBC1D15Q8TC07 691 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 DTD2Q96FN9 168 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 TPD52L3Q96J77 140 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 NODALQ96S42 347 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 ASPSCR1Q9BZE9 553 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 SH3BP4Q9P0V3 963 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CHD7Q9P2D1 2997 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 KIAA1549LQ6ZVL6 1849 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 XPNPEP2O43895 674 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 UGT2B11O75310 529 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 SOD1P00441 154 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CYP17A1P05093 508 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CISD3P0C7P0 127 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CEBPBP17676 345 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 FPR1P21462 350 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 IDSP22304 550 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 TIA1P31483 386 aaKnown RBP eCLIP20.99■□□□□ 0.95
SHMT1-202ENST00000352886 ST8SIA6P61647 398 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 BNIP3Q12983 259 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 GAB1Q13480 694 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 VEZF1Q14119 521 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 KLHL35Q6PF15 583 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 NLRP8Q86W28 1048 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 FBLIM1Q8WUP2 373 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 LRRC3BQ96PB8 259 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CCDC90BQ9GZT6 254 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 IL23AQ9NPF7 189 aa20.99■□□□□ 0.95
SHMT1-202ENST00000352886 CHCHD3Q9NX63 227 aaKnown RBP20.99■□□□□ 0.95
SHMT1-202ENST00000352886 PDP1Q9P0J1 537 aaPredicted RBP20.99■□□□□ 0.95
SHMT1-202ENST00000352886 SAMHD1Q9Y3Z3 626 aaKnown RBP20.99■□□□□ 0.95
SHMT1-202ENST00000352886 K7ESM1 405 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 SLC9A3R1O14745 358 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 PCDH7O60245 1069 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 NTRK1P04629 796 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CAPN13Q6MZZ7 669 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CAMKMTQ7Z624 323 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 TRIM73Q86UV7 250 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 TRAPPC5Q8IUR0 188 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 LMNTD1Q8N9Z9 388 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 MAL2Q969L2 176 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 HSPBAP1Q96EW2 488 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 COQ10AQ96MF6 247 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 CHST8Q9H2A9 424 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 WARS2Q9UGM6 360 aaKnown RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 SH2B3Q9UQQ2 575 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 TCF20Q9UGU0 1960 aaKnown RBP20.98■□□□□ 0.95
SHMT1-202ENST00000352886 PSMD11O00231 422 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 SPINT1O43278 529 aa20.98■□□□□ 0.95
SHMT1-202ENST00000352886 ANGPTL1O95841 491 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms