RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 FAM84BQ96KN1 310 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SLITRK1Q96PX8 696 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MAGIXQ9H6Y5 334 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ASCL3Q9NQ33 180 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SMCO4Q9NRQ5 59 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 AKAP7Q9P0M2 348 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PACSIN3Q9UKS6 424 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DYRK1BQ9Y463 629 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PCDHA1Q9Y5I3 950 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF541Q9H0D2 1346 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PHRF1Q9P1Y6 1649 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 A0A0B4J293 547 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TCAF2A6NFQ2 919 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 UBE2CO00762 179 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PGRMC2O15173 223 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MID1O15344 667 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 VNN2O95498 520 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 EPOP01588 193 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TPSB2P20231 275 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 EFNA1P20827 205 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TNFSF8P32971 234 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PCGF2P35227 344 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 POLR2IP36954 125 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TECP42680 631 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MAGEA3P43357 314 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MAPK8P45983 427 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 E2F1Q01094 437 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DPYSL3Q14195 570 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TAF1AQ15573 450 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TPSAB1Q15661 275 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TRIM61Q5EBN2 209 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 LIPMQ5VYY2 423 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RGS7BPQ6MZT1 257 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SUSD1Q6UWL2 747 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 LMBR1LQ6UX01 489 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CERS6Q6ZMG9 384 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ADGRF4Q8IZF3 695 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RNF148Q8N7C7 305 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 IPMKQ8NFU5 416 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GPR151Q8TDV0 419 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DDX17Q92841 729 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RNF31Q96EP0 1072 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MARK4Q96L34 752 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 NPAS2Q99743 824 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TMED9Q9BVK6 235 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PRKD2Q9BZL6 878 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GABARAPL1Q9H0R8 117 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 C11orf54Q9H0W9 315 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF768Q9H5H4 540 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TSR3Q9UJK0 312 aaKnown RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 POMT2Q9UKY4 750 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PCDHGB5Q9Y5G0 923 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PREX1Q8TCU6 1659 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 KAT6BQ8WYB5 2073 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 IFT172Q9UG01 1749 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TCRBV7S2A1N4TA0A589 114 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 UBE2QL1A1L167 161 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 APOC4-APOC2K7ER74 178 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TSPAN3O60637 253 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 IL1AP01583 271 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 APOC2P02655 101 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 METTL15P1P0C7V9 234 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 HNF1AP20823 631 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SDHAP31040 664 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 FHITP49789 147 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 EPHA5P54756 1037 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 NAGLUP54802 743 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 REEP5Q00765 189 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 CNTN1Q12860 1018 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PICALMQ13492 652 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 P2RY14Q15391 338 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SNAPC1Q16533 368 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 HSF5Q4G112 596 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 AGKQ53H12 422 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF57Q68EA5 555 aaPredicted RBP4.03□□□□□ -1.76
NEDD4-201ENST00000338963 WASH2PQ6VEQ5 465 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 MOB2Q70IA6 237 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF605Q86T29 641 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RFX6Q8HWS3 928 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 C10orf53Q8N6V4 93 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZNF454Q8N9F8 522 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SHKBP1Q8TBC3 707 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 DTD1Q8TEA8 209 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZDHHC1Q8WTX9 485 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SELENOMQ8WWX9 145 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PNMA5Q96PV4 448 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ZBTB18Q99592 522 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 TOLLIPQ9H0E2 274 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 BCO1Q9HAY6 547 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ARNT2Q9HBZ2 717 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 PCDHGA1Q9Y5H4 931 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 ATRNL1Q5VV63 1379 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 LOC100130705A0A1B0GUX0 176 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GSAPA4D1B5 854 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 SSNA1O43805 119 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 KERAO60938 352 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 RGS11O94810 467 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 GADD45GO95257 159 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 HLA-DQB1P01920 261 aa4.03□□□□□ -1.76
NEDD4-201ENST00000338963 COX5BP10606 129 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms