RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 CADM1Q9BY67 442 aaKnown RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 EURLQ9NYK6 297 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 ABI3Q9P2A4 366 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 STOX2Q9P2F5 926 aaPredicted RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 CCL26Q9Y258 94 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 UNC13CQ8NB66 2214 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 SMIM31A0A1B0GVY4 71 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 C1orf226A1L170 272 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 ARHGEF33A8MVX0 844 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 SYPP08247 313 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 NR2C1P13056 603 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 ATP5A1P25705 553 aaKnown RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 KCNC1P48547 511 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 RACK1P63244 317 aaKnown RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 LGALS3BPQ08380 585 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 PON2Q15165 354 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 CATSPEREQ5SY80 951 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 GK5Q6ZS86 529 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 SIX5Q8N196 739 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 TMEM130Q8N3G9 435 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 OR2L2Q8NH16 312 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 ZFRQ96KR1 1074 aaKnown RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 KCNC2Q96PR1 638 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 TSC22D3Q99576 134 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 FNDC11Q9BVV2 318 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 OR51B5Q9H339 312 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 COPS7AQ9UBW8 275 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 GMEB2Q9UKD1 530 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 FADS3Q9Y5Q0 445 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 HS3ST3A1Q9Y663 406 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 TLN1Q9Y490 2541 aaKnown RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 A0A1B0GTW7 788 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 SRPX2O60687 465 aaPredicted RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 DIO3P55073 304 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 ADAM15Q13444 863 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 ZC3H7AQ8IWR0 971 aaKnown RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 LIX1Q8N485 282 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 DPP10Q8N608 796 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 TOR1AIP2Q8NFQ8 470 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 RORBQ92753 470 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 SLC35G5Q96KT7 338 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 CEP19Q96LK0 163 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 DPYSL5Q9BPU6 564 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 PELI2Q9HAT8 420 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 PDFQ9HBH1 243 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 HEBP1Q9NRV9 189 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 EHD3Q9NZN3 535 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 DLGAP2Q9P1A6 1054 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 TMEM98Q9Y2Y6 226 aa6.64□□□□□ -1.35
SF3B1-201ENST00000335508 COL11A2P13942 1736 aaPredicted RBP6.64□□□□□ -1.35
SF3B1-201ENST00000335508 APOA1P02647 267 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 PROS1P07225 676 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 HBQ1P09105 142 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 OCM2P0CE71 109 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 OCMP0CE72 109 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 NT5EP21589 574 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 ST13P50502 369 aaKnown RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CTSCP53634 463 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 MTTPP55157 894 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 RAB8AP61006 207 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CDK3Q00526 305 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CCDC92Q53HC0 331 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 PNCKQ6P2M8 343 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 EIF3MQ7L2H7 374 aaKnown RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 HSD11B1LQ7Z5J1 315 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 HPS6Q86YV9 775 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 FAM217AQ8IXS0 508 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 MAPK15Q8TD08 544 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 OR5P2Q8WZ92 322 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF707Q96C28 371 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 UHRF1Q96T88 793 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 IER2Q9BTL4 223 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 ITM2BQ9Y287 266 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CLCA3PQ9Y6N3 262 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 ALPK2Q86TB3 2170 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 SCN10AQ9Y5Y9 1956 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CPED1A4D0V7 1026 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 I6L893 689 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 MAN1A2O60476 641 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 FADS2O95864 444 aaKnown RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 TGFB1P01137 390 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 IGFBP6P24592 240 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 RPS15AP62244 130 aaKnown RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 TBPL1P62380 186 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 WSCD2Q2TBF2 565 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF789Q5FWF6 425 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 LCTLQ6UWM7 567 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 OR8J3Q8NGG0 315 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 WDR48Q8TAF3 677 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 AGAP11Q8TF27 550 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 PYDC1Q8WXC3 89 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CLPTM1LQ96KA5 538 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 DUSP23Q9BVJ7 150 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 REEP4Q9H6H4 257 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 ZDHHC2Q9UIJ5 367 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 MCM3APO60318 1980 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 REM1O75628 298 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 RAP2AP10114 183 aa6.63□□□□□ -1.35
SF3B1-201ENST00000335508 CTSOP43234 321 aaPredicted RBP6.63□□□□□ -1.35
SF3B1-201ENST00000335508 KHKP50053 298 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms