RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 LEKR1Q6ZMV7 388 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 FCRLAQ7L513 359 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ANKRD33Q7Z3H0 272 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 GPR141Q7Z602 305 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 LACC1Q8IV20 430 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 CCDC63Q8NA47 563 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ADAD2Q8NCV1 583 aaKnown RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 APOBEC4Q8WW27 367 aaKnown RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ARHGAP45Q92619 1136 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ST6GALNAC6Q969X2 333 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PRAC1Q96KF2 57 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 BTBD9Q96Q07 612 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 CDK19Q9BWU1 502 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 RNF121Q9H920 327 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 FGF22Q9HCT0 170 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 MAN2C1Q9NTJ4 1040 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 EPHA6Q9UF33 1036 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 IL36AQ9UHA7 158 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ELF5Q9UKW6 265 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 ITGA11Q9UKX5 1188 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 CDH7Q9ULB5 785 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 WDR37Q9Y2I8 494 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PPP2R2CQ9Y2T4 447 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 KCNK7Q9Y2U2 307 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 HEG1Q9ULI3 1381 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 POLA1P09884 1462 aaPredicted RBP2.95□□□□□ -1.94
HMGB1-201ENST00000326004 DNMBPQ6XZF7 1577 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 PREX1Q8TCU6 1659 aa2.95□□□□□ -1.94
HMGB1-201ENST00000326004 RPGRIP1LQ68CZ1 1315 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 KIAA0556O60303 1618 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 SHROOM2Q13796 1616 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 YDJCA8MPS7 323 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PI4K2BG5E9Z4 385 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 FPGTO14772 594 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 MOCS2O96007 188 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 RLN1P04808 185 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PSMB4P28070 264 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 ATP12AP54707 1039 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 KRT83P78385 493 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 SP3Q02447 781 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 GUCY2DQ02846 1103 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 HNRNPDQ14103 355 aaKnown RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 EXT1Q16394 746 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 ZFP69Q49AA0 526 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 ZRANB3Q5FWF4 1079 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 FAM166AQ6J272 317 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 TTC27Q6P3X3 843 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PRSS55Q6UWB4 352 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 HOGA1Q86XE5 327 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PRSS35Q8N3Z0 413 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 ATAD1Q8NBU5 361 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 ZNF248Q8NDW4 579 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 NCOA7Q8NI08 942 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 AFAP1L1Q8TED9 768 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 GATAD1Q8WUU5 269 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 RIT1Q92963 219 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 BSCL2Q96G97 398 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 KLHL5Q96PQ7 755 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 KRT12Q99456 494 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 NDNQ99608 321 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 RIMS4Q9H426 269 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 MINDY3Q9H8M7 445 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 RAVER2Q9HCJ3 691 aaKnown RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 SCRT2Q9NQ03 307 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 MDFICQ9P1T7 246 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 VPS18Q9P253 973 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 LEF1Q9UJU2 399 aaPredicted RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PRDM4Q9UKN5 801 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 MRPS28Q9Y2Q9 187 aaKnown RBP2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PYGO1Q9Y3Y4 419 aa2.94□□□□□ -1.94
HMGB1-201ENST00000326004 PTPRKQ15262 1439 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 POGZQ7Z3K3 1410 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 MAP3K4Q9Y6R4 1608 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 GRIN2AQ12879 1464 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 A0A087WUV0 522 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 A0A087X002 238 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SNURFLB1AK76 121 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 NPIPA3F8WFD2 350 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SELENOFO60613 162 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 ZG16O60844 167 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 YES1P07947 543 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 F3P13726 295 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 CD59P13987 128 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 RPL35AP18077 110 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 ELAVL4P26378 380 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 TCF7P36402 384 aaPredicted RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 LEPRP48357 1165 aaKnown RBP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 PRELPP51888 382 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 PAX9P55771 341 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 CLDN17P56750 224 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SRSF9Q13242 221 aaKnown RBP eCLIP2.93□□□□□ -1.94
HMGB1-201ENST00000326004 EFTUD2Q15029 972 aaKnown RBP eCLIP2.93□□□□□ -1.945e-16■■□□□ 13.9
HMGB1-201ENST00000326004 PTPN14Q15678 1187 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 CASC4Q6P4E1 433 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 CYB5D1Q6P9G0 228 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 BHLHB9Q6PI77 547 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 BTNL8Q6UX41 500 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 GSG1LQ6UXU4 331 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 Q6ZSR9 355 aa2.93□□□□□ -1.94
HMGB1-201ENST00000326004 SLC24A5Q71RS6 500 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms