RNA–Protein interactions for RNA: ENST00000298281.8

PCF11-201, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCF11, Length 7,677 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-201ENST00000298281 PIK3CBP42338 1070 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 ZNF81P51508 661 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 IL10RBQ08334 325 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 TIGD6Q17RP2 521 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 CLNKQ7Z7G1 428 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 AGAP2Q99490 1192 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 TRMT61BQ9BVS5 477 aaKnown RBP11.76□□□□□ -0.53
PCF11-201ENST00000298281 LCHNA4D1U4 455 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 H7C1Q1 480 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 HEXBP07686 556 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 CPN2P22792 545 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 RHBDL3P58872 404 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 DDR1Q08345 913 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 HNRNPDQ14103 355 aaKnown RBP11.76□□□□□ -0.53
PCF11-201ENST00000298281 PLEKHG6Q3KR16 790 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 SDHAF4Q5VUM1 108 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 PAMR1Q6UXH9 720 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 DPY19L3Q6ZPD9 716 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 AHSA2Q719I0 299 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 ILDR1Q86SU0 546 aaPredicted RBP11.76□□□□□ -0.53
PCF11-201ENST00000298281 TIGD4Q8IY51 512 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 MFSD2AQ8NA29 543 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 ATAD1Q8NBU5 361 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 TSTD1Q8NFU3 115 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 LAMP5Q9UJQ1 280 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 SPIN1Q9Y657 262 aaPredicted RBP11.76□□□□□ -0.53
PCF11-201ENST00000298281 SPAG17Q6Q759 2223 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 SMIM28A0A1B0GU29 152 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 PLA2G16P53816 162 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 HABP2Q14520 560 aaPredicted RBP11.76□□□□□ -0.53
PCF11-201ENST00000298281 ABRAXAS2Q15018 415 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 TMEM225Q6GV28 225 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 SPOCK2Q92563 424 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 GPR88Q9GZN0 384 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 SYT4Q9H2B2 425 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 ENAMQ9NRM1 1142 aa11.76□□□□□ -0.53
PCF11-201ENST00000298281 WDPCPO95876 746 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 MT-CYBP00156 380 aaPredicted RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 ADAP00813 363 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 ITGB5P18084 799 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 BRCC3P46736 316 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 SLC5A3P53794 718 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 RBM48Q5RL73 367 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 EEF1DP3Q658K8 133 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 STEAP3Q658P3 488 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 ABHD15Q6UXT9 468 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 WFIKKN2Q8TEU8 576 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 TM9SF2Q99805 663 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 RBCK1Q9BYM8 510 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 PAK6Q9NQU5 681 aaPredicted RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 TRNAU1APQ9NX07 287 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 HCN2Q9UL51 889 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 PCDHB10Q9UN67 800 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 PCDHA2Q9Y5H9 948 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 NDUFS1P28331 727 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 TIE1P35590 1138 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 DYRK1AQ13627 763 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 NLGN4XQ8N0W4 816 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 PLD5Q8N7P1 536 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 GSTCDQ8NEC7 633 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 NCSTNQ92542 709 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 FRZBQ92765 325 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 GCM1Q9NP62 436 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 RP1P56715 2156 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 OR2AG2A6NM03 316 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 MAGEB17A8MXT2 336 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 NPHS1O60500 1241 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 FARS2O95363 451 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 ZIC2O95409 532 aaPredicted RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 PET100P0DJ07 73 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 MPSTP25325 297 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 CARD17Q5XLA6 110 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 ENPP7Q6UWV6 458 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 GALNT10Q86SR1 603 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 XYLT1Q86Y38 959 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 ZNF100Q8IYN0 542 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 YIPF4Q9BSR8 244 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 TMED9Q9BVK6 235 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 ANKRD28O15084 1053 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 LDB2O43679 373 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 DUSP11O75319 330 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 NCBP2P52298 156 aaKnown RBP eCLIP11.75□□□□□ -0.535e-10■■□□□ 13.6
PCF11-201ENST00000298281 GAD2Q05329 585 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 IFI44LQ53G44 452 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 GK5Q6ZS86 529 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 SPRYD4Q8WW59 207 aaPredicted RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 TMCO6Q96DC7 493 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 MYRFLQ96LU7 910 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 PELOQ9BRX2 385 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 TMEM185BQ9H7F4 350 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 EIF2B3Q9NR50 452 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 CDH22Q9UJ99 828 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 SNRNP200O75643 2136 aaKnown RBP11.75□□□□□ -0.53
PCF11-201ENST00000298281 SLC7A4O43246 635 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 SPATA31C1P0DKV0 1188 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 PTPN2P17706 415 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 SRYQ05066 204 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 TARDBPQ13148 414 aaKnown RBP eCLIP11.75□□□□□ -0.538e-6■□□□□ 10.7
PCF11-201ENST00000298281 C12orf40Q86WS4 652 aa11.75□□□□□ -0.53
PCF11-201ENST00000298281 CCNL2Q96S94 520 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms