RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 UAP1L1Q3KQV9 507 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 SV2CQ496J9 727 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 MPPE1Q53F39 396 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 USP39Q53GS9 565 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 SDHAF4Q5VUM1 108 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 LBX2Q6XYB7 198 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 CCDC149Q6ZUS6 474 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 PAF1Q8N7H5 531 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 SENP8Q96LD8 212 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 MRPL9Q9BYD2 267 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 PPIL3Q9H2H8 161 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 MIXL1Q9H2W2 232 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 CLMPQ9H6B4 373 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 ELOVL2Q9NXB9 296 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 SCML1Q9UN30 329 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 NDRG2Q9UN36 371 aaKnown RBP13.04□□□□□ -0.32
SKA3-201ENST00000298260 TRAPPC4Q9Y296 219 aa13.04□□□□□ -0.32
SKA3-201ENST00000298260 LOC102723532A0A0G2JNH3 316 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 A0A1W2PQL4 384 aaPredicted RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 FABP12A6NFH5 140 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 TSPAN19P0C672 248 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CD72P21854 359 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ALAS2P22557 587 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 WARSP23381 471 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 PTPN6P29350 595 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 GGT2P36268 569 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ACVRL1P37023 503 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 PSPHP78330 225 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 QPRTQ15274 297 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 GPR19Q15760 415 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 INO80DQ53TQ3 878 aaPredicted RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 RAB41Q5JT25 222 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 SLC35F1Q5T1Q4 408 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 PDZK1Q5T2W1 519 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 TIGD7Q6NT04 549 aaPredicted RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 FAHD1Q6P587 224 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 PLPP6Q8IY26 295 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 RDH10Q8IZV5 341 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 RTL3Q8N8U3 475 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 C3orf58Q8NDZ4 430 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CD200R1Q8TD46 325 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 SH3KBP1Q96B97 665 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 HHATLQ9HCP6 504 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 TXNRD2Q9NNW7 524 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 TRMT6Q9UJA5 497 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 DUSP12Q9UNI6 340 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 SAMD4AQ9UPU9 718 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 YARS2Q9Y2Z4 477 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 TNPO3Q9Y5L0 923 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 GRXCR2A6NFK2 248 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 IRAK2O43187 625 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 SH3BGRLO75368 114 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 MYCP01106 439 aaPredicted RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 SRCP12931 536 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CTRB1P17538 263 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 S100A3P33764 101 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 KDELR2P33947 212 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 GJA5P36382 358 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 RPS5P46782 204 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 IL2P60568 153 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 DCAF4L1Q3SXM0 396 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 TOR1AIP1Q5JTV8 583 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CTSL3PQ5NE16 218 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 PIK3R6Q5UE93 754 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ATG9BQ674R7 924 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CTRB2Q6GPI1 263 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 TMIGD1Q6UXZ0 262 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 WDR53Q7Z5U6 358 aaPredicted RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 GALNT6Q8NCL4 622 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ATP6V1C2Q8NEY4 427 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 SETD6Q8TBK2 473 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 OLA1Q9NTK5 396 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 FAM227AF5H4B4 570 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 J3KTA2 159 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 BTN3A3O00478 584 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 RFXANKO14593 260 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 AP2A2O94973 939 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ARHGEF15O94989 841 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CDRT1O95170 752 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CCNDBP1O95273 360 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CPSF4O95639 269 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 IL6P05231 212 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 PRKACAP17612 351 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CSTF2P33240 577 aaKnown RBP eCLIP13.03□□□□□ -0.32
SKA3-201ENST00000298260 CRYBA2P53672 197 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 CCL23P55773 120 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 DBPQ10586 325 aaPredicted RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 HNRNPA0Q13151 305 aaKnown RBP13.03□□□□□ -0.32
SKA3-201ENST00000298260 PLET1Q6UQ28 207 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ZNF621Q6ZSS3 439 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ANKS3Q6ZW76 656 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 GALNT7Q86SF2 657 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 DENND1CQ8IV53 801 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 PEX13Q92968 403 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 OPALINQ96PE5 141 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 KATNAL1Q9BW62 490 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 EBPLQ9BY08 206 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 ZNF556Q9HAH1 456 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 C12orf10Q9HB07 376 aa13.03□□□□□ -0.32
SKA3-201ENST00000298260 LRTM1Q9HBL6 345 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms