RNA–Protein interactions for RNA: ENST00000292510.5

VPS28-201, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 979 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-201ENST00000292510 CDC16Q13042 620 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 ERV3-1Q14264 604 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 NCF4Q15080 339 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 PFKFB4Q16877 469 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 FAM214AQ32MH5 1076 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 NKAIN1Q4KMZ8 207 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 PRAMEF9Q5VWM5 478 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 KLC3Q6P597 504 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 TIFABQ6ZNK6 161 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 COX15Q7KZN9 410 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 SNX31Q8N9S9 440 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 EPS8L3Q8TE67 593 aaKnown RBP12.74□□□□□ -0.37
VPS28-201ENST00000292510 MTBPQ96DY7 904 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 DPH2Q9BQC3 489 aaPredicted RBP12.74□□□□□ -0.37
VPS28-201ENST00000292510 NLNQ9BYT8 704 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 CD244Q9BZW8 370 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 CNOT10Q9H9A5 744 aaKnown RBP12.74□□□□□ -0.37
VPS28-201ENST00000292510 PELI2Q9HAT8 420 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 DNAJC11Q9NVH1 559 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 IFT80Q9P2H3 777 aaPredicted RBP12.74□□□□□ -0.37
VPS28-201ENST00000292510 CPSF2Q9P2I0 782 aaKnown RBP12.74□□□□□ -0.37
VPS28-201ENST00000292510 XPR1Q9UBH6 696 aa12.74□□□□□ -0.37
VPS28-201ENST00000292510 KCNE1BA0A087WTH5 132 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 TRBC2A0A5B9 178 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 CDC14CA4D256 554 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 LRRC14BA6NHZ5 514 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 SYCE1LA8MT33 242 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 C9J4A7 227 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 TK2O00142 265 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 CREG1O75629 220 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 IPO13O94829 963 aaKnown RBP12.73□□□□□ -0.37
VPS28-201ENST00000292510 RAB40ALP0C0E4 278 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 GFAPP14136 432 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 EPORP19235 508 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 SCTRP47872 440 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 CDC20Q12834 499 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 IL10RAQ13651 578 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 SLBPQ14493 270 aaKnown RBP eCLIP12.73□□□□□ -0.37
VPS28-201ENST00000292510 MUM1Q2TAK8 710 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 YOD1Q5VVQ6 348 aaPredicted RBP12.73□□□□□ -0.37
VPS28-201ENST00000292510 SLCO4C1Q6ZQN7 724 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 ASPGQ86U10 573 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 CYP4X1Q8N118 509 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 ARHGEF39Q8N4T4 335 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 ANKRD53Q8N9V6 530 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 MFSD9Q8NBP5 474 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 SLC13A3Q8WWT9 602 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 TM4SF19Q96DZ7 209 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 MOCOSQ96EN8 888 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 GPR87Q9BY21 358 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 GPN3Q9UHW5 284 aaPredicted RBP12.73□□□□□ -0.37
VPS28-201ENST00000292510 TCFL5Q9UL49 500 aa12.73□□□□□ -0.37
VPS28-201ENST00000292510 FAM208BQ5VWN6 2430 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 PIEZO2Q9H5I5 2752 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 A0A1W2PPM1 405 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 FFAR3O14843 346 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 GPR42O15529 346 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 FOXS1O43638 330 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 SIX3O95343 332 aaPredicted RBP12.72□□□□□ -0.37
VPS28-201ENST00000292510 SERPIND1P05546 499 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 RBP1P09455 135 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 C1GALT1C1LP0DN25 315 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 PYGBP11216 843 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 COL6A2P12110 1019 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 GNAZP19086 355 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 SETDB1Q15047 1291 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 RBBP5Q15291 538 aaKnown RBP12.72□□□□□ -0.37
VPS28-201ENST00000292510 PDK4Q16654 411 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 TSNAXIP1Q2TAA8 658 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 ATG9BQ674R7 924 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 MRPL14Q6P1L8 145 aaKnown RBP12.72□□□□□ -0.37
VPS28-201ENST00000292510 EMBQ6PCB8 327 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 PRSS41Q7RTY9 318 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 LRRC70Q7Z2Q7 622 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 KCT2Q8NC54 265 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 ZCCHC10Q8TBK6 192 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 UBTD2Q8WUN7 234 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 EXTL1Q92935 676 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 CAVIN3Q969G5 261 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 COL26A1Q96A83 441 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 THAP11Q96EK4 314 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 AIF1LQ9BQI0 150 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 SARGQ9BW04 601 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 GEMIN8Q9NWZ8 242 aaKnown RBP12.72□□□□□ -0.37
VPS28-201ENST00000292510 GPRC5BQ9NZH0 403 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 CTSFQ9UBX1 484 aa12.72□□□□□ -0.37
VPS28-201ENST00000292510 ATRXP46100 2492 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 A0A0A6YYC8 382 aaPredicted RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 CCDC189A1A4V9 331 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 I3L1I5 382 aaPredicted RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 K7EPI3 171 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 TXNDC9O14530 226 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 CLGNO14967 610 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 NDUFS4O43181 175 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 KLK8O60259 260 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 KLF7O75840 302 aaPredicted RBP12.71□□□□□ -0.37
VPS28-201ENST00000292510 ONECUT2O95948 504 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 SBK3P0C264 359 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 CD22P20273 847 aa12.71□□□□□ -0.37
VPS28-201ENST00000292510 EMP3P54852 163 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms