RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 OR4K1Q8NGD4 311 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 DTD2Q96FN9 168 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 DOK1Q99704 481 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 DGCR6LQ9BY27 220 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 PAK1IP1Q9NWT1 392 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 ETAA1Q9NY74 926 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 NFKBIL1Q9UBC1 381 aaPredicted RBP17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 PRKAB1Q9Y478 270 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 PCDHB11Q9Y5F2 797 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 MMP20O60882 483 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 XYLBO75191 536 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 TGFB1P01137 390 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 FABP3P05413 133 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 NR4A1P22736 598 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 RAD23AP54725 363 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 DDX59Q5T1V6 619 aaKnown RBP eCLIP17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 CRTC3Q6UUV7 619 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 TRMT11Q7Z4G4 463 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 CHTF18Q8WVB6 975 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 THAP11Q96EK4 314 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 FAM83CQ9BQN1 747 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 CCDC90BQ9GZT6 254 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 BRF2Q9HAW0 419 aa17.69■□□□□ 0.42
SHKBP1-201ENST00000291842 OTOL1A6NHN0 477 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 NPPBP16860 134 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF182P17025 639 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 IDSP22304 550 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 RPS6KA3P51812 740 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 CAMK1Q14012 370 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 MED27Q6P2C8 311 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 C12orf76Q8N812 135 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 ARRDC3Q96B67 414 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 OTUB2Q96DC9 234 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 COQ10AQ96MF6 247 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 PDP1Q9P0J1 537 aaPredicted RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 SLC1A7O00341 560 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 PCDH7O60245 1069 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 MAN1A2O60476 641 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 SRPRAP08240 638 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 MC1RQ01726 317 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 SLBPQ14493 270 aaKnown RBP eCLIP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 FNDC3BQ53EP0 1204 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF385BQ569K4 471 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF852Q6ZMS4 543 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 GPR155Q7Z3F1 870 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 HORMAD1Q86X24 394 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 ZC3H7AQ8IWR0 971 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 LRIG1Q96JA1 1093 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 NRTNQ99748 197 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 TUBA1CQ9BQE3 449 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 SPNS1Q9H2V7 528 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 OR51B5Q9H339 312 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 RAPGEFL1Q9UHV5 662 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 BAG5Q9UL15 447 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 EXO1Q9UQ84 846 aaKnown RBP17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 PCM1Q15154 2024 aa17.68■□□□□ 0.42
SHKBP1-201ENST00000291842 SEC14L2O76054 403 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 FSHRP23945 695 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 EPHA2P29317 976 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 FMO3P31513 532 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 GPR1P46091 355 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 GJA8P48165 433 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 CRYBA2P53672 197 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 PLA2G16P53816 162 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 BNIP3Q12983 259 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 XKR5Q6UX68 686 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 NLRP8Q86W28 1048 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 NAGSQ8N159 534 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 PIK3C3Q8NEB9 887 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 OR4A15Q8NGL6 344 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 B4GALNT2Q8NHY0 566 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 BADQ92934 168 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 TM9SF3Q9HD45 589 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 WARS2Q9UGM6 360 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 RPS6KA6Q9UK32 745 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 CDH7Q9ULB5 785 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 SAMHD1Q9Y3Z3 626 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 TCF20Q9UGU0 1960 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 LRRK1Q38SD2 2015 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 SLC9A3R1O14745 358 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 NOL3O60936 208 aaKnown RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 LILRB5O75023 590 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 JUNBP17275 347 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 GSTM2P28161 218 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 TIA1P31483 386 aaKnown RBP eCLIP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 ARHGDIAP52565 204 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF33BQ06732 778 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 CDK5R2Q13319 367 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 BIRC2Q13490 618 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 NFE2L1Q14494 772 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF658BQ4V348 819 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 CAPN13Q6MZZ7 669 aaPredicted RBP17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 CBLL1Q75N03 491 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 NPAS3Q8IXF0 933 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 SYNPOQ8N3V7 929 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 ZNF740Q8NDX6 193 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 NUS1Q96E22 293 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 IL17FQ96PD4 163 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 RAD9AQ99638 391 aa17.67■□□□□ 0.42
SHKBP1-201ENST00000291842 PLAGL1Q9UM63 463 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms