RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 SLC29A3Q9BZD2 475 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 ASPSCR1Q9BZE9 553 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 KCNE1BA0A087WTH5 132 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 WASHC1A8K0Z3 465 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 NUAK1O60285 661 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 CATP04040 527 aaKnown RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 LCKP06239 509 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 CTNNB1P35222 781 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 SLC6A11P48066 632 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 WNT3P56703 355 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 MVKQ03426 396 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 SLBPQ14493 270 aaKnown RBP eCLIP16.04■□□□□ 0.16
VPS54-201ENST00000272322 MYBPC3Q14896 1274 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 CARTPTQ16568 116 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 ZNF385BQ569K4 471 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 ATG9BQ674R7 924 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 WASH2PQ6VEQ5 465 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 MACROD1Q9BQ69 325 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 REEP1Q9H902 201 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 PLGRKTQ9HBL7 147 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 RLIMQ9NVW2 624 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 THUMPD1Q9NXG2 353 aaKnown RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 TUBA8Q9NY65 449 aaPredicted RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 NOTCH4Q99466 2003 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 TRBV5-3A0A0A0MS03 114 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 CLTBP09497 229 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 PRPS1L1P21108 318 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 C21orf33P30042 268 aaPredicted RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 PRIM2P49643 509 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 CLK3P49761 638 aaKnown RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 NDNFQ8TB73 568 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 GTPBP3Q969Y2 492 aaKnown RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 MCCC1Q96RQ3 725 aaPredicted RBP16.04■□□□□ 0.16
VPS54-201ENST00000272322 TM7SF3Q9NS93 570 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 MOSPD1Q9UJG1 213 aa16.04■□□□□ 0.16
VPS54-201ENST00000272322 CTSAP10619 480 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 MYOGP15173 224 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 DCKP27707 260 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 TBPL1P62380 186 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 KLHL17Q6TDP4 642 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 PTOV1Q86YD1 416 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 RORBQ92753 470 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 PROX1Q92786 737 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 ZNF689Q96CS4 500 aaPredicted RBP16.03■□□□□ 0.16
VPS54-201ENST00000272322 RERGLQ9H628 205 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 RETREG1Q9H6L5 497 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 POLE4Q9NR33 117 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 TBX21Q9UL17 535 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 PCYT1BQ9Y5K3 369 aaPredicted RBP16.03■□□□□ 0.16
VPS54-201ENST00000272322 WDR87Q6ZQQ6 2873 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 NME6O75414 186 aaPredicted RBP16.03■□□□□ 0.16
VPS54-201ENST00000272322 MT-ND2P03891 347 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 CDH12P55289 794 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 HBA1P69905 142 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 SOWAHCQ53LP3 525 aaPredicted RBP16.03■□□□□ 0.16
VPS54-201ENST00000272322 PAGE2BQ5JRK9 111 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 PARS2Q7L3T8 475 aaKnown RBP16.03■□□□□ 0.16
VPS54-201ENST00000272322 ADCK2Q7Z695 626 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 B3GNT8Q7Z7M8 397 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 ZZZ3Q8IYH5 903 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 ZNF480Q8WV37 535 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 POF1BQ8WVV4 589 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 GLYATL1Q969I3 302 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 ALOXE3Q9BYJ1 711 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 ZBP1Q9H171 429 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 MIR1-1HGQ9H1L0 117 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 RAD21L1Q9H4I0 556 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 CTPS2Q9NRF8 586 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 TBC1D23Q9NUY8 699 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 RAB23Q9ULC3 237 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 KCNE2Q9Y6J6 123 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 AGAP14A8MT82 685 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 GFYI3L273 518 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 MAPK1P28482 360 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 VIPR1P32241 457 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 GPR1P46091 355 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 GZMMP51124 257 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 CREMQ03060 361 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 C2orf80Q0P641 193 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 NXPE3Q969Y0 559 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 PLEKHA8Q96JA3 519 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 FOPNLQ96NB1 174 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 SLC6A14Q9UN76 642 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 ASF1AQ9Y294 204 aa16.03■□□□□ 0.16
VPS54-201ENST00000272322 M0QX08 132 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 M0R3G1 203 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 TPST2O60704 377 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 ATG13O75143 517 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 NDUFS2O75306 463 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 CCNDBP1O95273 360 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 ALPPL2P10696 532 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 TAS2R50P59544 299 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 SKIV2LQ15477 1246 aaKnown RBP16.02■□□□□ 0.16
VPS54-201ENST00000272322 FXNQ16595 210 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 MMAAQ8IVH4 418 aaKnown RBP16.02■□□□□ 0.16
VPS54-201ENST00000272322 CPXM2Q8N436 756 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 LEMD2Q8NC56 503 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 VN1R2Q8NFZ6 395 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 BTN2A2Q8WVV5 523 aa16.02■□□□□ 0.16
VPS54-201ENST00000272322 CCDC115Q96NT0 180 aa16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms