RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 SLC29A3Q9BZD2 475 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 TAS2R16Q9NYV7 291 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 SLCO3A1Q9UIG8 710 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 ACSL6Q9UKU0 697 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 MAP4K5Q9Y4K4 846 aa12.23□□□□□ -0.45
LIG1-201ENST00000263274 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 PSMD11O00231 422 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 SNPHO15079 494 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 FZD6O60353 706 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 AMD1P17707 334 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 LMAN2Q12907 356 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 CBX2Q14781 532 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 UGT8Q16880 541 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 BBS7Q8IWZ6 715 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 FAM9CQ8IZT9 166 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 NLGN4XQ8N0W4 816 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 NAGSQ8N159 534 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 OR4A15Q8NGL6 344 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 ITPKCQ96DU7 683 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 KCNS3Q9BQ31 491 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 KLF16Q9BXK1 252 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 ZNF556Q9HAH1 456 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 WDR70Q9NW82 654 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 TET1Q8NFU7 2136 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 UNC80Q8N2C7 3258 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 PTPRDP23468 1912 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 NLRC5Q86WI3 1866 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 AQP9O43315 295 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 JRKO75564 520 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 EPORP19235 508 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 IL18R1Q13478 541 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 GPR33Q49SQ1 333 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 PLEKHG7Q6ZR37 379 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 OR8H2Q8N162 312 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 TMEM169Q96HH4 297 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 Q96MT0 163 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 AKIP1Q9NQ31 210 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 TMEM45AQ9NWC5 275 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 RAB23Q9ULC3 237 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 E7EQ34 232 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 CD9P21926 228 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 AOAHP28039 575 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 CD6P30203 668 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 CTSKP43235 329 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 RECQLP46063 649 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 SNRPD1P62314 119 aaKnown RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 ZXDCQ2QGD7 858 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 PRSS36Q5K4E3 855 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 FAAH2Q6GMR7 532 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 TMPRSS11BQ86T26 416 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 NPAS4Q8IUM7 802 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 ZZZ3Q8IYH5 903 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 LILRA3Q8N6C8 439 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 DCAF4L2Q8NA75 395 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 RAET1EQ8TD07 263 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 CSGALNACT1Q8TDX6 532 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 TMEM121BQ9BXQ6 578 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 ITPAQ9BY32 194 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 OR51E2Q9H255 320 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 DUSP21Q9H596 190 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 CCNB1IP1Q9NPC3 277 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 NECTIN3Q9NQS3 549 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 KIAA1522Q9P206 1035 aaPredicted RBP12.22□□□□□ -0.45
LIG1-201ENST00000263274 RNF6Q9Y252 685 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 PMF1-BGLAPU3KQ54 211 aa12.22□□□□□ -0.45
LIG1-201ENST00000263274 PRAMEF4O60810 478 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 C9P02748 559 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ETFAP13804 333 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 SELPP16109 830 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 RPS3P23396 243 aaKnown RBP eCLIP12.21□□□□□ -0.45
LIG1-201ENST00000263274 CHI3L1P36222 383 aaPredicted RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 MEF2AQ02078 507 aaPredicted RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 SMARCB1Q12824 385 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 BCL2A1Q16548 175 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 PLEKHG6Q3KR16 790 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ZNF404Q494X3 552 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 C5orf22Q49AR2 442 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 PRAMEF9Q5VWM5 478 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 KDM4DQ6B0I6 523 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 MACC1Q6ZN28 852 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 Q6ZVL8 140 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 Q6ZVU0 165 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 TSPYL5Q86VY4 417 aaPredicted RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 CALHM3Q86XJ0 350 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 SLC5A8Q8N695 610 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ZNF366Q8N895 744 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 FAM83FQ8NEG4 500 aaPredicted RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 OR2AP1Q8NGE2 309 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ZNF461Q8TAF7 563 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 CLSTN3Q9BQT9 956 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 TTLL2Q9BWV7 592 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 DDX28Q9NUL7 540 aaKnown RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 SCHIP1Q9P0W5 487 aaPredicted RBP12.21□□□□□ -0.45
LIG1-201ENST00000263274 B4GALT6Q9UBX8 382 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 B3GNT3Q9Y2A9 372 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 PNMA8CA0A1B0GUJ8 204 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 FAM47E-STBD1D6RA91 191 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 M0QX08 132 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 KPNA5O15131 536 aa12.21□□□□□ -0.45
LIG1-201ENST00000263274 ITGAMP11215 1152 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms