RNA–Protein interactions for RNA: ENST00000238688.9

SLIRP-201, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

APPRIS P3 TSL 2 BASIC

Gene SLIRP, Length 394 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-201ENST00000238688 SAMD4BQ5PRF9 694 aaKnown RBP12.72□□□□□ -0.37
SLIRP-201ENST00000238688 PRAMEF13Q5VWM6 474 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 AAGABQ6PD74 315 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 KANSL1Q7Z3B3 1105 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 GATAD2AQ86YP4 633 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 MYLK4Q86YV6 388 aaPredicted RBP12.72□□□□□ -0.37
SLIRP-201ENST00000238688 FBXW8Q8N3Y1 598 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 ABHD11Q8NFV4 315 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 TTLQ8NG68 377 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 OR2T11Q8NH01 316 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 WDR20Q8TBZ3 569 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 SAP25Q8TEE9 199 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 SLC5A11Q8WWX8 675 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 STMN2Q93045 179 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 RCN3Q96D15 328 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 CXorf40BQ96DE9 158 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 SPDL1Q96EA4 605 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 MED8Q96G25 268 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 ELF4Q99607 663 aaPredicted RBP12.72□□□□□ -0.37
SLIRP-201ENST00000238688 KIR3DX1Q9H7L2 352 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 GPR27Q9NS67 375 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 VPS29Q9UBQ0 182 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 SLC23A2Q9UGH3 650 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 RUVBL1Q9Y265 456 aaKnown RBP12.72□□□□□ -0.37
SLIRP-201ENST00000238688 CA5BQ9Y2D0 317 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 HEATR5BQ9P2D3 2071 aa12.72□□□□□ -0.37
SLIRP-201ENST00000238688 TLR4O00206 839 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 ACP5P13686 325 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 DDX5P17844 614 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 MAT2AP31153 395 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 RPL3P39023 403 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 ASMTP46597 345 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 HTR6P50406 440 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 POLR2JP52435 117 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 ARFIP1P53367 373 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 C21orf59P57076 290 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 SLC25A3Q00325 362 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 DOC2AQ14183 400 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 SUZ12Q15022 739 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 REP15Q6BDI9 236 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 C8orf82Q6P1X6 216 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 GALNT18Q6P9A2 607 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 CYP20A1Q6UW02 462 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 CHST15Q7LFX5 561 aaPredicted RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 C17orf64Q86WR6 236 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 MARCH9Q86YJ5 346 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 FUNDC1Q8IVP5 155 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 RBM12BQ8IXT5 1001 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 SDR16C5Q8N3Y7 309 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 TBC1D19Q8N5T2 526 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 ENDOVQ8N8Q3 282 aaKnown RBP12.71□□□□□ -0.37
SLIRP-201ENST00000238688 MFSD2AQ8NA29 543 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 OR2L8Q8NGY9 312 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 TESCQ96BS2 214 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 PYCR2Q96C36 320 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 ANKRD27Q96NW4 1050 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 OR4K3Q96R72 315 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 CDC6Q99741 560 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 ACPTQ9BZG2 426 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 CAAP1Q9H8G2 361 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 AASDHPPTQ9NRN7 309 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 FAM8A1Q9UBU6 413 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 CROTQ9UKG9 612 aa12.71□□□□□ -0.37
SLIRP-201ENST00000238688 FREM2Q5SZK8 3169 aa12.71□□□□□ -0.38
SLIRP-201ENST00000238688 TMEM8BA6NDV4 472 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 CCDC154A6NI56 674 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 E7EQ34 232 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 ANKRD28O15084 1053 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 DFNA5O60443 496 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 SEC22BO75396 215 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 SEMA3DO95025 777 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 PDYNP01213 254 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 MTHFD1P11586 935 aaKnown RBP12.7□□□□□ -0.38
SLIRP-201ENST00000238688 PRPS1L1P21108 318 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 VARSP26640 1264 aaKnown RBP12.7□□□□□ -0.38
SLIRP-201ENST00000238688 SHMT2P34897 504 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 GRK6P43250 576 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 RXRGP48443 463 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 DIO3P55073 304 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 CLDN8P56748 225 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 RPL38P63173 70 aaKnown RBP12.7□□□□□ -0.38
SLIRP-201ENST00000238688 TRAP1Q12931 704 aaKnown RBP12.7□□□□□ -0.38
SLIRP-201ENST00000238688 BNIP3Q12983 259 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 KIAA0040Q15053 153 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 PIGGQ5H8A4 983 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 IL23RQ5VWK5 629 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 PAOXQ6QHF9 649 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 NXPE4Q6UWF7 544 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 GCNT7Q6ZNI0 430 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 GK5Q6ZS86 529 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 TMPRSS7Q7RTY8 843 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 GOLM1Q8NBJ4 401 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 PROKR1Q8TCW9 393 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 NEIL2Q969S2 332 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 SLC22A18Q96BI1 424 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 BMFQ96LC9 184 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 C12orf66Q96MD2 445 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 AIF1LQ9BQI0 150 aa12.7□□□□□ -0.38
SLIRP-201ENST00000238688 DENND2DQ9H6A0 471 aaPredicted RBP12.7□□□□□ -0.38
SLIRP-201ENST00000238688 ERVMER34-1Q9H9K5 563 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms