RNA–Protein interactions for RNA: ENST00000215793.12

SF3A1-201, Transcript of splicing factor 3a subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3A1, Length 5,143 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-201ENST00000215793 PCDHB11Q9Y5F2 797 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 PCDHGB2Q9Y5G2 931 aa13.18□□□□□ -0.3
SF3A1-201ENST00000215793 JUNP05412 331 aaKnown RBP13.17□□□□□ -0.3
SF3A1-201ENST00000215793 ATP4BP51164 291 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 BTN3A2P78410 334 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 TCEAL1Q15170 157 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 SPANXN4Q5MJ08 99 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PHTF2Q8N3S3 785 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PQLC3Q8N755 202 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 FAM46DQ8NEK8 389 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 GRHL3Q8TE85 626 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 CYB5D2Q8WUJ1 264 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 AURKBQ96GD4 344 aaPredicted RBP13.17□□□□□ -0.3
SF3A1-201ENST00000215793 NSUN3Q9H649 340 aaKnown RBP13.17□□□□□ -0.3
SF3A1-201ENST00000215793 SRRDQ9UH36 339 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PLOD2O00469 737 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 MLLT3P42568 568 aaPredicted RBP13.17□□□□□ -0.3
SF3A1-201ENST00000215793 DGKEP52429 567 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 OR12D2P58182 307 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 ARL9Q6T311 187 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PEX13Q92968 403 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 BIRC7Q96CA5 298 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 CD180Q99467 661 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 MCCC2Q9HCC0 563 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 CENPMQ9NSP4 180 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM9Q9P0T7 183 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PCDHGA3Q9Y5H0 932 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 CASRP41180 1078 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 WSCD2Q2TBF2 565 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF615Q8N8J6 731 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PKP2Q99959 881 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 CD244Q9BZW8 370 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PIM1P11309 404 aaPredicted RBP13.17□□□□□ -0.3
SF3A1-201ENST00000215793 CD72P21854 359 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 GDF5P43026 501 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PCLAFQ15004 111 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 SGCBQ16585 318 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 ABCA11PQ4W5N1 156 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 COLEC12Q5KU26 742 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 GPRC6AQ5T6X5 926 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 TOMM5Q8N4H5 51 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 OR9I1Q8NGQ6 314 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 TSGA13Q96PP4 275 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 B3GNT4Q9C0J1 378 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 BTBD1Q9H0C5 482 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 TM9SF3Q9HD45 589 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 NLE1Q9NVX2 485 aaPredicted RBP13.17□□□□□ -0.3
SF3A1-201ENST00000215793 FBXL12Q9NXK8 326 aa13.17□□□□□ -0.3
SF3A1-201ENST00000215793 PSMD9O00233 223 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ADAMTS3O15072 1205 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 INMTO95050 263 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 BDKRB1P46663 353 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM164Q5U3C3 297 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TICAM1Q8IUC6 712 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 NLGN2Q8NFZ4 835 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 NFKBIDQ8NI38 313 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 OVCA2Q8WZ82 227 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 THRSPQ92748 146 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 HSH2DQ96JZ2 352 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 C1orf74Q96LT6 269 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ADAD1Q96M93 576 aaKnown RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 SIX4Q9UIU6 781 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 PCDHGB6Q9Y5F9 930 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 A0A1W2PQ45 241 aaPredicted RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 A0A1W2PQY0 241 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 MTMR11A4FU01 709 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 PGAM2P15259 253 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 GADD45AP24522 165 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 PDHA2P29803 388 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ZMYND11Q15326 602 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 DECR1Q16698 335 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TBC1D25Q3MII6 688 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 C4orf46Q504U0 113 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TMEM126BQ8IUX1 230 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 OR52E4Q8NGH9 312 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 OR9A1PQ8NGU1 263 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 SETD6Q8TBK2 473 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ALPK1Q96QP1 1244 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 RETREG1Q9H6L5 497 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF395Q9H8N7 513 aaPredicted RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 EIF3KQ9UBQ5 218 aaKnown RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 SEC14L4Q9UDX3 406 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 B4DGG1 531 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 SOCS5O75159 536 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 HK1P19367 917 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 EDNRAP25101 427 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 SLC15A1P46059 708 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 CDH11P55287 796 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 OC90Q02509 493 aaPredicted RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 TPRG1LQ5T0D9 272 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 THOC7Q6I9Y2 204 aaKnown RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 EIF5AL1Q6IS14 154 aaKnown RBP13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ZNF627Q7L945 461 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 AUTS2Q8WXX7 1259 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 ZUFSPQ96AP4 578 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 LRCH3Q96II8 777 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 RDH12Q96NR8 316 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 C12orf4Q9NQ89 552 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 HCN4Q9Y3Q4 1203 aa13.16□□□□□ -0.3
SF3A1-201ENST00000215793 BHMG1C9JSJ3 638 aaPredicted RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms