RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 IGLV4-3A0A075B6K6 122 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LOC100509620A0A075B734 347 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LOC105371242A0A075B767 164 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 A0A087WZ39 114 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TRAV24A0A0B4J272 114 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 IGHV3-16A0A0C4DH30 117 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TCRBV21S2A2A0A5A6 115 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TRBC2A0A5B9 178 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZNF840PA6NDX5 716 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RSPH10B2B2RC85 870 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 C17orf105B2RV13 164 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ANHXE9PGG2 379 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LMO7DNF2Z398 122 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 H0YAE9 185 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CCDC188H7C350 402 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RTCAO00442 366 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 MEIS2O14770 477 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 NPHP1O15259 732 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PHF1O43189 567 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 MAGEC1O60732 1142 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 GFPT2O94808 682 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 VENTXO95231 258 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CELF2O95319 508 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 ACSL3O95573 720 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SEMA4FO95754 770 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 GSRP00390 522 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RENP00797 406 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 IGHEP01854 428 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FYNP06241 537 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RSPH10BP0C881 870 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 THEGLP0DJG4 465 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TCF4P15884 667 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZNF19P17023 458 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ALOX12P18054 663 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RPL35AP18077 110 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 KLK2P20151 261 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PRKACGP22612 351 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LHCGRP22888 699 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 AZGP1P25311 298 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 PDHA2P29803 388 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 GCH1P30793 250 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TIA1P31483 386 aaKnown RBP eCLIP0.33□□□□□ -2.36
VPS35-212ENST00000640313 CHRNA3P32297 505 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MC5RP33032 325 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 DUTP33316 252 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 ACTN2P35609 894 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 EIF2DP41214 584 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 MNDAP41218 407 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RPL21P46778 160 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 SLC9A3P48764 834 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 KHKP50053 298 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ATP4BP51164 291 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CCR3P51677 355 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 NDST2P52849 883 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LBX1P52954 281 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PPP5CP53041 499 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 LIMK1P53667 647 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 UBASH3AP57075 661 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 DCDC1P59894 354 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ARF3P61204 181 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 POLR2LP62875 67 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 IFI35P80217 286 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 ARF1P84077 181 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 KLC1Q07866 573 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ACSM1Q08AH1 577 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RASGEF1BQ0VAM2 473 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 HSPB3Q12988 150 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 STK4Q13043 487 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CHAF1BQ13112 559 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ALCAMQ13740 583 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 BECN1Q14457 450 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 KRT33BQ14525 404 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TMEM132DQ14C87 1099 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 WTAPQ15007 396 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 E2F5Q15329 346 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SIX1Q15475 284 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 TGIF1Q15583 401 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MAPRE1Q15691 268 aaKnown RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 SNAPC1Q16533 368 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TAZQ16635 292 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PTGISQ16647 500 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 PHKG1Q16816 387 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TMEM266Q2M3C6 531 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SGSM1Q2NKQ1 1148 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MCMDC2Q4G0Z9 681 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 EIPR1Q53HC9 387 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 C2orf83Q53S99 150 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 TEX35Q5T0J7 233 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 FAM182AQ5T1J6 154 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 UTF1Q5T230 341 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ERMARDQ5T6L9 678 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 WLSQ5T9L3 541 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 GPR157Q5UAW9 335 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 SPATA1Q5VX52 437 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 RNLSQ5VYX0 342 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 CES4AQ5XG92 561 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 OR4A47Q6IF82 309 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 ZNF770Q6IQ21 691 aaPredicted RBP0.33□□□□□ -2.36
VPS35-212ENST00000640313 C11orf63Q6NUN7 778 aa0.33□□□□□ -2.36
VPS35-212ENST00000640313 MFSD12Q6NUT3 480 aa0.33□□□□□ -2.36
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms