RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 CTSL3PQ5NE16 218 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 ACER2Q5QJU3 275 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 TUBA3EQ6PEY2 450 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 TMEM205Q6UW68 189 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 CPEB2Q7Z5Q1 589 aaKnown RBP14.2□□□□□ -0.14
SYNE2-228ENST00000639659 SPPL2CQ8IUH8 684 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 LRRC57Q8N9N7 239 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 OR9A4Q8NGU2 314 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 IMMP1LQ96LU5 166 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF354BQ96LW1 612 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 UTP23Q9BRU9 249 aaKnown RBP14.2□□□□□ -0.14
SYNE2-228ENST00000639659 RBCK1Q9BYM8 510 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 TGIF2Q9GZN2 237 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 LACRTQ9GZZ8 138 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 GPAMQ9HCL2 828 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 UTP6Q9NYH9 597 aaKnown RBP14.2□□□□□ -0.14
SYNE2-228ENST00000639659 C19orf25Q9UFG5 118 aaPredicted RBP14.2□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF148Q9UQR1 794 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 MEMO1Q9Y316 297 aa14.2□□□□□ -0.14
SYNE2-228ENST00000639659 EPN1Q9Y6I3 576 aaPredicted RBP14.2□□□□□ -0.14
SYNE2-228ENST00000639659 NCOA6Q14686 2063 aaPredicted RBP14.19□□□□□ -0.14
SYNE2-228ENST00000639659 SCN2AQ99250 2005 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 SETD2Q9BYW2 2564 aaPredicted RBP14.19□□□□□ -0.14
SYNE2-228ENST00000639659 IGKV1-8A0A0C4DH67 115 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 OR2W5A6NFC9 320 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 PHF2O75151 1096 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 SUN1O94901 812 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 CHRM3P20309 590 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 NMBRP28336 390 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 EMP3P54852 163 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 KLF1Q13351 362 aaPredicted RBP14.19□□□□□ -0.14
SYNE2-228ENST00000639659 PCID2Q5JVF3 399 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 GARNL3Q5VVW2 1013 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 ICE2Q659A1 982 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 SPINK14Q6IE38 97 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 CES3Q6UWW8 571 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 MEX3BQ6ZN04 569 aaKnown RBP14.19□□□□□ -0.14
SYNE2-228ENST00000639659 LRRC6Q86X45 466 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 CRLF3Q8IUI8 442 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 SHISA5Q8N114 240 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 CCDC89Q8N998 374 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 ZCCHC10Q8TBK6 192 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 CALR3Q96L12 384 aaKnown RBP14.19□□□□□ -0.14
SYNE2-228ENST00000639659 OR2A5Q96R48 311 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 PKP4Q99569 1192 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 NEU2Q9Y3R4 380 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 HEATR5BQ9P2D3 2071 aa14.19□□□□□ -0.14
SYNE2-228ENST00000639659 E5RI56 91 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 SMAPO00193 183 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 TXNDC9O14530 226 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 CATP04040 527 aaKnown RBP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 PKMP14618 531 aaKnown RBP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 EZRP15311 586 aaKnown RBP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 CD46P15529 392 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 IL1RNP18510 177 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 RPS3P23396 243 aaKnown RBP eCLIP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 XCR1P46094 333 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 PNLIPRP1P54315 467 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 SNRPNP63162 240 aaKnown RBP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 KLHL38Q2WGJ6 581 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 ACSBG2Q5FVE4 666 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 PRSS41Q7RTY9 318 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 GALNTL5Q7Z4T8 443 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 FAM98AQ8NCA5 519 aaKnown RBP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 ADAMTS18Q8TE60 1221 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 AGAP11Q8TF27 550 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 CA5BP1Q8WTZ4 195 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 C1orf54Q8WWF1 131 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 SDCCAG3Q96C92 435 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 MACROD1Q9BQ69 325 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 FAM114A2Q9NRY5 505 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 CRYL1Q9Y2S2 319 aa14.18□□□□□ -0.14
SYNE2-228ENST00000639659 REXO2Q9Y3B8 237 aaKnown RBP14.18□□□□□ -0.14
SYNE2-228ENST00000639659 SCN3AQ9NY46 2000 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 GABRR3A8MPY1 467 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MIF4GDA9UHW6 222 aaKnown RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 LIASO43766 372 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MAN1A2O60476 641 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 CDC123O75794 336 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 VAPBO95292 243 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 ZSCAN5DPP0CG00 497 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 AGAP20933 346 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 STIP1P31948 543 aaKnown RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 CD96P40200 585 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 TERF1P54274 439 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 BASP1P80723 227 aaKnown RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 PRDX1Q06830 199 aaKnown RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 ACTN3Q08043 901 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MAPKAPK3Q16644 382 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MEP1AQ16819 746 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 KRTCAP3Q53RY4 240 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 SEL1L2Q5TEA6 688 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 PLAG1Q6DJT9 500 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 ZNF425Q6IV72 752 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 PNPLA5Q7Z6Z6 429 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 ANKRD37Q7Z713 158 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 SDCCAG8Q86SQ7 713 aaPredicted RBP14.17□□□□□ -0.14
SYNE2-228ENST00000639659 SPNS2Q8IVW8 549 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 SYCE1Q8N0S2 351 aa14.17□□□□□ -0.14
SYNE2-228ENST00000639659 MPP5Q8N3R9 675 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms