RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 NPIPA3F8WFD2 350 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 QSOX1O00391 747 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 NDC80O14777 642 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 RPN2P04844 631 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 GLI4P10075 376 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 NR2C2P49116 596 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 CYB561P49447 251 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 ITGA8P53708 1063 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 DCAF7P61962 342 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 MYL5Q02045 173 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 HSPA14Q0VDF9 509 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 NFKBIBQ15653 356 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 GXYLT1Q4G148 440 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 FLYWCH1Q4VC44 716 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 PAPD4Q6PIY7 484 aaKnown RBP13.65□□□□□ -0.22
CLN3-249ENST00000636685 BZW1Q7L1Q6 419 aaKnown RBP13.65□□□□□ -0.22
CLN3-249ENST00000636685 RPS19BP1Q86WX3 136 aaKnown RBP13.65□□□□□ -0.22
CLN3-249ENST00000636685 PHC2Q8IXK0 858 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 OR2A1Q8NGT9 310 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 VAT1Q99536 393 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 C19orf43Q9BQ61 176 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 TTYH2Q9BSA4 534 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 DPH7Q9BTV6 452 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 DRC3Q9H069 523 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 DEFB127Q9H1M4 99 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 GBA3Q9H227 469 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 ARHGAP21Q5T5U3 1957 aa13.65□□□□□ -0.22
CLN3-249ENST00000636685 A0A1W2PPV9 198 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 H7C0S8 307 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 PEX1O43933 1283 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 ANXA9O76027 345 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 OR56A5P0C7T3 313 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 ACVR2AP27037 513 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 UQCRC1P31930 480 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 CCR7P32248 378 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 ADH7P40394 386 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 TAS2R50P59544 299 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 ITIH4Q14624 930 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 MESDQ14696 234 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 PCBP2Q15366 365 aaKnown RBP eCLIP13.64□□□□□ -0.23
CLN3-249ENST00000636685 CCSMST1Q4G0I0 132 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 SFT2D3Q587I9 215 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 GARNL3Q5VVW2 1013 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 FBXW10Q5XX13 1052 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 DENND5AQ6IQ26 1287 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 ALKBH5Q6P6C2 394 aaKnown RBP13.64□□□□□ -0.23
CLN3-249ENST00000636685 MFSD7Q6UXD7 560 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 WDR53Q7Z5U6 358 aaPredicted RBP13.64□□□□□ -0.23
CLN3-249ENST00000636685 LGI4Q8N135 537 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 VWA5B2Q8N398 1253 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 KIF2BQ8N4N8 673 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 OR9A4Q8NGU2 314 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 C16orf52Q8NHV5 167 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 FAM222BQ8WU58 562 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 TMEM125Q96AQ2 219 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 PLCD4Q9BRC7 762 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 ACAT2Q9BWD1 397 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 C10orf88Q9H8K7 445 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 PLEKHF2Q9H8W4 249 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 RTN4Q9NQC3 1192 aaKnown RBP13.64□□□□□ -0.23
CLN3-249ENST00000636685 TRHDEQ9UKU6 1024 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 KLF13Q9Y2Y9 288 aaPredicted RBP13.64□□□□□ -0.23
CLN3-249ENST00000636685 FAM215AQ9Y5M1 114 aa13.64□□□□□ -0.23
CLN3-249ENST00000636685 OR51F1A6NGY5 319 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 P2RX6O15547 441 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 OR1I1O60431 355 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 CST8O60676 142 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 CD53P19397 219 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 BDKRB1P46663 353 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 ACTN3Q08043 901 aaPredicted RBP13.63□□□□□ -0.23
CLN3-249ENST00000636685 SPARCL1Q14515 664 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 SLC25A35Q3KQZ1 300 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 RTL6Q6ICC9 239 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 ZNF585AQ6P3V2 769 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 PACS1Q6VY07 963 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 B3GNT6Q6ZMB0 384 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 SIMC1Q8NDZ2 872 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 ARMC2Q8NEN0 867 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 LKAAEAR1Q8TD35 194 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 SLCO2A1Q92959 643 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 HAUS1Q96CS2 278 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 CDKN2AIPNLQ96HQ2 116 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 RAB11FIP5Q9BXF6 653 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 TRIM45Q9H8W5 580 aaPredicted RBP13.63□□□□□ -0.23
CLN3-249ENST00000636685 NLE1Q9NVX2 485 aaPredicted RBP13.63□□□□□ -0.23
CLN3-249ENST00000636685 BEX4Q9NWD9 120 aaPredicted RBP13.63□□□□□ -0.23
CLN3-249ENST00000636685 UVRAGQ9P2Y5 699 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 CUBNO60494 3623 aa13.63□□□□□ -0.23
CLN3-249ENST00000636685 EML6Q6ZMW3 1958 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 KLRC4-KLRK1H3BQV0 150 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 VPS26AO75436 327 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 GPC4O75487 556 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 STATHP02808 62 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 CYC1P08574 325 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 TNNT1P13805 278 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 PSMB4P28070 264 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 AVPR1BP47901 424 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 AGTR2P50052 363 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 HLCSP50747 726 aa13.62□□□□□ -0.23
CLN3-249ENST00000636685 GPR85P60893 370 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms