RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 ING4Q9UNL4 249 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 PDCD5O14737 125 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 CLEC12AQ5QGZ9 265 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 USP30Q70CQ3 517 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 LAPTM4BQ86VI4 370 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 HAVCR1Q96D42 359 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 C1orf74Q96LT6 269 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 PRTFDC1Q9NRG1 225 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 APOBEC3BQ9UH17 382 aaKnown RBP11.06□□□□□ -0.64
CLIP1-219ENST00000620786 SOCS5O75159 536 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 RPL5P46777 297 aaKnown RBP11.06□□□□□ -0.64
CLIP1-219ENST00000620786 OLIG2Q13516 323 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 DUOXA1Q1HG43 343 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 Q6ZVL8 140 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 OR4F6Q8NGB9 312 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 FAM3CQ92520 227 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 SGCDQ92629 289 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 NPY6RQ99463 290 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 OR51B5Q9H339 312 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 NOBOXO60393 691 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 MATN1P21941 496 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 CCNOP22674 350 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 GDF5P43026 501 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 RPS6KA3P51812 740 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 NOXRED1Q6NXP6 359 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 ZBTB46Q86UZ6 589 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 CENPNQ96H22 339 aaPredicted RBP11.06□□□□□ -0.64
CLIP1-219ENST00000620786 OXSMQ9NWU1 459 aa11.06□□□□□ -0.64
CLIP1-219ENST00000620786 GBAP04062 536 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PIK3CBP42338 1070 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 EIF1AXP47813 144 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 GALK1P51570 392 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CLIP4Q8N3C7 705 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 NFKBIDQ8NI38 313 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 UFD1Q92890 307 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TSACCQ96A04 125 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 FZD3Q9NPG1 666 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 M0R2N6 131 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 AGPSO00116 658 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 NR2C1P13056 603 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 VIPR2P41587 438 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TSPAN5P62079 268 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF267Q14586 743 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 LPAL2Q16609 132 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CYP1B1Q16678 543 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PTCHD3Q3KNS1 767 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF542PQ5EBM4 170 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 NANOGNBQ7Z5D8 188 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TMEM139Q8IV31 216 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TRAM1L1Q8N609 369 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 MCFD2Q8NI22 146 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 SLC35B2Q8TB61 432 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF358Q9NW07 568 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PADI2Q9Y2J8 665 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CDC123O75794 336 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 MAP3K8P41279 467 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CCT3P49368 545 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 XKP51811 444 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TXNL4AP83876 142 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 FAM214AQ32MH5 1076 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 KLHL22Q53GT1 634 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PLEKHS1Q5SXH7 462 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CDH24Q86UP0 819 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CEP97Q8IW35 865 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TRPV1Q8NER1 839 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 OR6N1Q8NGY5 312 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 GORASP1Q9BQQ3 440 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 DERL2Q9GZP9 239 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 POLR2J3Q9H1A7 115 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TMED5Q9Y3A6 229 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 IGLON5A6NGN9 336 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CLIC1O00299 241 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ONECUT3O60422 494 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 MEF2AQ02078 507 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 MADCAM1Q13477 382 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 KCNJ11Q14654 390 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TMEM44Q2T9K0 475 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CRB2Q5IJ48 1285 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 RBM20Q5T481 1227 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 SLC9A4Q6AI14 798 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ADNP2Q6IQ32 1131 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 KIAA1161Q6NSJ0 714 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 QSOX2Q6ZRP7 698 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CBR4Q8N4T8 237 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ADAD1Q96M93 576 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 MRM3Q9HC36 420 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 TMLHEQ9NVH6 421 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 MAFFQ9ULX9 164 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 RNF11Q9Y3C5 154 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 SHOX2O60902 331 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 NOS1APO75052 506 aaPredicted RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ZNF217O75362 1048 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 NTSR1P30989 418 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 KCNC3Q14003 757 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PTPRCAPQ14761 206 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PRPF38BQ5VTL8 546 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 ADGRD2Q7Z7M1 963 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 PNLDC1Q8NA58 520 aaKnown RBP11.05□□□□□ -0.64
CLIP1-219ENST00000620786 CST11Q9H112 138 aa11.05□□□□□ -0.64
CLIP1-219ENST00000620786 WDR6Q9NNW5 1121 aaKnown RBP11.05□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms