RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 SLC41A2Q96JW4 573 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 TMEM74Q96NL1 305 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 SLC29A3Q9BZD2 475 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 KLHL25Q9H0H3 589 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 SPNS1Q9H2V7 528 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 ZNF768Q9H5H4 540 aaKnown RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 TNFRSF12AQ9NP84 129 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 PILRAQ9UKJ1 303 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 APOBEC2Q9Y235 224 aaKnown RBP13.77□□□□□ -0.21
UPF1-211ENST00000600868 RAP2CQ9Y3L5 183 aa13.77□□□□□ -0.21
UPF1-211ENST00000600868 COL27A1Q8IZC6 1860 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 SPAARA0A1B0GVQ0 90 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 TCP11X1B4DZS4 312 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 TMX2-CTNND1H3BSU7 103 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 HAT1O14929 419 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 HGSO14964 777 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 NRP2O60462 931 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 FTH1P19P0C7X4 201 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 UROSP10746 265 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 NELFEP18615 380 aaKnown RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 GSTM2P28161 218 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 CCKBRP32239 447 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 NOVA1P51513 510 aaKnown RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 GYS2P54840 703 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 RPS15AP62244 130 aaKnown RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 SIM1P81133 766 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 MEF2AQ02078 507 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 RSPO4Q2I0M5 234 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 C10orf62Q5T681 223 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 MED27Q6P2C8 311 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 FBXO42Q6P3S6 717 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 TMIGD1Q6UXZ0 262 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 RNF44Q7L0R7 432 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 MYLK4Q86YV6 388 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 CLYBLQ8N0X4 340 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 D2HGDHQ8N465 521 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 DNAJC22Q8N4W6 341 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 CDYL2Q8N8U2 506 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 METTL6Q8TCB7 284 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 THAP11Q96EK4 314 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 SEC16BQ96JE7 1060 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 CCDC74BQ96LY2 380 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 C7orf26Q96N11 449 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 RTKNQ9BST9 563 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 SHCBP1LQ9BZQ2 653 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 PDE7BQ9NP56 450 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 ZDHHC2Q9UIJ5 367 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 ZNF490Q9ULM2 529 aaPredicted RBP13.76□□□□□ -0.21
UPF1-211ENST00000600868 TSC22D4Q9Y3Q8 395 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 TRAF6Q9Y4K3 522 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 PCDHGA11Q9Y5H2 935 aa13.76□□□□□ -0.21
UPF1-211ENST00000600868 A8MU76 341 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 AZIN1O14977 448 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 LCMT2O60294 686 aaKnown RBP13.75□□□□□ -0.21
UPF1-211ENST00000600868 PRAMEF10O60809 474 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 CTSVO60911 334 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 CRCPO75575 148 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 KCNK5O95279 499 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 CAPN1P07384 714 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 MSL3P1P0C860 447 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 AHRP35869 848 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 MLLT3P42568 568 aaPredicted RBP13.75□□□□□ -0.21
UPF1-211ENST00000600868 SCTRP47872 440 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 ARL4DP49703 201 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 RPL14P50914 215 aaKnown RBP13.75□□□□□ -0.21
UPF1-211ENST00000600868 PDX1P52945 283 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 INHBCP55103 352 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 ZRSR2Q15696 482 aaKnown RBP13.75□□□□□ -0.21
UPF1-211ENST00000600868 CPSF6Q16630 551 aaKnown RBP eCLIP13.75□□□□□ -0.21
UPF1-211ENST00000600868 ZC3H12BQ5HYM0 836 aaKnown RBP13.75□□□□□ -0.21
UPF1-211ENST00000600868 SH2D4BQ5SQS7 431 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 TMTC4Q5T4D3 741 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 TTC19Q6DKK2 380 aaPredicted RBP13.75□□□□□ -0.21
UPF1-211ENST00000600868 ZNF781Q8N8C0 355 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 MFSD9Q8NBP5 474 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 ZNF740Q8NDX6 193 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 TTLQ8NG68 377 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 OR7G3Q8NG95 312 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 REPS1Q96D71 796 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 ZFYVE21Q9BQ24 234 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 RHBGQ9H310 441 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 FAM60AQ9NP50 221 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 SLCO1B3Q9NPD5 702 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 SOHLH2Q9NX45 425 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 SNX6Q9UNH7 406 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 PCDHGA4Q9Y5G9 962 aa13.75□□□□□ -0.21
UPF1-211ENST00000600868 FEZF1A0PJY2 475 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 OR1F1O43749 312 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 MT-CO3P00414 261 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 KRT6AP02538 564 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 KRT6BP04259 564 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 HMOX2P30519 316 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 SERPINB1P30740 379 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 BCL6P41182 706 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 PIK3CBP42338 1070 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 GABRA4P48169 554 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 KRT6CP48668 564 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 SEPHS1P49903 392 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 FOXA1P55317 472 aa13.74□□□□□ -0.21
UPF1-211ENST00000600868 ZNF33BQ06732 778 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms