RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 ASIC3Q9UHC3 531 aa9.31□□□□□ -0.92
VRK3-216ENST00000599342 NTNG1Q9Y2I2 539 aa9.31□□□□□ -0.92
VRK3-216ENST00000599342 MED16Q9Y2X0 877 aa9.31□□□□□ -0.92
VRK3-216ENST00000599342 NEU2Q9Y3R4 380 aa9.31□□□□□ -0.92
VRK3-216ENST00000599342 IGHV1-45A0A0A0MS14 117 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 H0YIG0 161 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 P2RX6O15547 441 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 WFS1O76024 890 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 KLHL18O94889 574 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 BMP10O95393 424 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 TTC4O95801 387 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 LDLRP01130 860 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 SERPINA7P05543 415 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 C8GP07360 202 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 EDN3P14138 238 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 CCND1P24385 295 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 GRK3P35626 688 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 CRYMQ14894 314 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 SYT16Q17RD7 645 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 CYHR1Q6ZMK1 362 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 RIPOR1Q6ZS17 1223 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 MAMDC2Q7Z304 686 aaPredicted RBP9.3□□□□□ -0.92
VRK3-216ENST00000599342 PCGF5Q86SE9 256 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 LRRC56Q8IYG6 542 aaPredicted RBP9.3□□□□□ -0.92
VRK3-216ENST00000599342 AGGF1Q8N302 714 aaeCLIP9.3□□□□□ -0.92
VRK3-216ENST00000599342 SLC35F6Q8N357 371 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 SIRT6Q8N6T7 355 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 BCORP1Q8N888 145 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 C2CD4AQ8NCU7 369 aaPredicted RBP9.3□□□□□ -0.92
VRK3-216ENST00000599342 OR1N1Q8NGS0 311 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 BRIX1Q8TDN6 353 aaKnown RBP9.3□□□□□ -0.92
VRK3-216ENST00000599342 FAR1Q8WVX9 515 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 METTL21AQ8WXB1 218 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 ALKBH8Q96BT7 664 aaKnown RBP9.3□□□□□ -0.92
VRK3-216ENST00000599342 SIGLEC10Q96LC7 697 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 MAGEB10Q96LZ2 347 aaPredicted RBP9.3□□□□□ -0.92
VRK3-216ENST00000599342 CCDC138Q96M89 665 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 OSBPL9Q96SU4 736 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 NDNQ99608 321 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 SYNPO2LQ9H987 977 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 TMEM184CQ9NVA4 438 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 TAS2R13Q9NYV9 303 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 MKL2Q9ULH7 1088 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 PTPN13Q12923 2485 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 ANKRD12Q6UB98 2062 aa9.3□□□□□ -0.92
VRK3-216ENST00000599342 ESPL1Q14674 2120 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 TRAV17A0A0B4J275 112 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 A0A1W2PQ72 361 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 CES2O00748 559 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 ZSCAN12O43309 604 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 FOXS1O43638 330 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 NSA2O95478 260 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 STATHP02808 62 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 HIST1H2AGP0C0S8 130 aaPredicted RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 C8orf89P0DMQ9 161 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 ICAM2P13598 275 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 HIST1H2ADP20671 130 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 PER3P56645 1201 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 MAT1AQ00266 395 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 DHX9Q08211 1270 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 INAQ16352 499 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 MINDY4Q4G0A6 757 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 SPANXN3Q5MJ09 141 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 RNASEH2BQ5TBB1 312 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 RPUSD3Q6P087 351 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 C17orf64Q86WR6 236 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 SPNS2Q8IVW8 549 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 ZC3H7AQ8IWR0 971 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 ARHGEF39Q8N4T4 335 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 CAMKVQ8NCB2 501 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 CATSPER1Q8NEC5 780 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 OR9A4Q8NGU2 314 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 SUN3Q8TAQ9 357 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 EEF1AKMT1Q8WVE0 214 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 THAP11Q96EK4 314 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 HIST1H2AHQ96KK5 128 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 HIST1H2AJQ99878 128 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 NAT9Q9BTE0 207 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 H2AFJQ9BTM1 129 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 FAM129AQ9BZQ8 928 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP9.29□□□□□ -0.92
VRK3-216ENST00000599342 ATG10Q9H0Y0 220 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 PARVBQ9HBI1 364 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 PPANQ9NQ55 473 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 OLAHQ9NV23 265 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 C19orf25Q9UFG5 118 aaPredicted RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 SNX12Q9UMY4 172 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 PDE10AQ9Y233 779 aa9.29□□□□□ -0.92
VRK3-216ENST00000599342 MRPS2Q9Y399 296 aaKnown RBP9.29□□□□□ -0.92
VRK3-216ENST00000599342 KCNE1BA0A087WTH5 132 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 LOC102723996A0A087X1L8 192 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 FEZF1A0PJY2 475 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 WIPF3A6NGB9 483 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 E2F3O00716 465 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 DNALI1O14645 258 aaPredicted RBP9.28□□□□□ -0.92
VRK3-216ENST00000599342 SLC16A5O15375 505 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 BANF1O75531 89 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 CYC1P08574 325 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 SLC35G6P0C7Q6 338 aa9.28□□□□□ -0.92
VRK3-216ENST00000599342 MYBL2P10244 700 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms