RNA–Protein interactions for RNA: ENST00000599223.5

IRF3-223, Transcript of interferon regulatory factor 3, human

TSL 1 (best) BASIC

Gene IRF3, Length 1,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
IRF3-223	ENST00000599223	NR4A3	Q92570	626 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	MARVELD3	Q96A59	401 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	MVB12A	Q96EY5	273 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	MMAB	Q96EY8	250 aa	Predicted RBP	13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	VPS50	Q96JG6	964 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	YIPF2	Q9BWQ6	316 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	DRC3	Q9H069	523 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	ABCF3	Q9NUQ8	709 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	C14orf105	Q9NVL8	296 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	SNX12	Q9UMY4	172 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	SH2B3	Q9UQQ2	575 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	DRG1	Q9Y295	367 aa	Known RBP	13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	AKAP9	Q99996	3911 aa		13.92	□□□□□ -0.18
IRF3-223	ENST00000599223	UQCRHL	A0A096LP55	91 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	DYTN	A2CJ06	578 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223		H3BMM5	538 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	SMAP	O00193	183 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PHF2	O75151	1096 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	WISP2	O76076	250 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	WDPCP	O95876	746 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	CAT	P04040	527 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	UQCRH	P07919	91 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	MST1	P26927	711 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PAFAH1B1	P43034	410 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PER3	P56645	1201 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PMP22	Q01453	160 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PRDX1	Q06830	199 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	ARHGAP19	Q14CB8	494 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	NAA25	Q14CX7	972 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	NEPRO	Q6NW34	567 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	LANCL3	Q6ZV70	420 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	VN1R4	Q7Z5H5	301 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	SDCCAG8	Q86SQ7	713 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	SRRM1	Q8IYB3	904 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PRELID2	Q8N945	189 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	ZNF669	Q96BR6	464 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	TCF12	Q99081	682 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	UNK	Q9C0B0	810 aa	Known RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	TGIF2	Q9GZN2	237 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	ZNF700	Q9H0M5	742 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	FAM114A2	Q9NRY5	505 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	RIC8B	Q9NVN3	520 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	RNF14	Q9UBS8	474 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PDZD2	O15018	2839 aa		13.91	□□□□□ -0.18
IRF3-223	ENST00000599223	PKDREJ	Q9NTG1	2253 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	TRAV17	A0A0B4J275	112 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	IGHV3-20	A0A0C4DH32	117 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	ENO4	A6NNW6	628 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223		E5RI56	91 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	BMP10	O95393	424 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	HEXB	P07686	556 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	FDXR	P22570	491 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	GRN	P28799	593 aa	Known RBP	13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	IMPA1	P29218	277 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	CXCR5	P32302	372 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	MAGEA6	P43360	314 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	CDK16	Q00536	496 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	INA	Q16352	499 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	GARNL3	Q5VVW2	1013 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	TTC27	Q6P3X3	843 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	TMEM205	Q6UW68	189 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	C4orf22	Q6V702	233 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	NEK10	Q6ZWH5	1172 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	PIWIL4	Q7Z3Z4	852 aa	Known RBP	13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	ADCK2	Q7Z695	626 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	OR9A4	Q8NGU2	314 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	RERG	Q96A58	199 aa	Predicted RBP	13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	IMMP1L	Q96LU5	166 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	MACROD1	Q9BQ69	325 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	VN1R1	Q9GZP7	353 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	FBXO6	Q9NRD1	293 aa	Predicted RBP	13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	MKL2	Q9ULH7	1088 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	CDC14A	Q9UNH5	594 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	ENTPD4	Q9Y227	616 aa		13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	NCOA6	Q14686	2063 aa	Predicted RBP	13.9	□□□□□ -0.18
IRF3-223	ENST00000599223	CELSR1	Q9NYQ6	3014 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CACNA1C	Q13936	2221 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	ZCWPW2	A0A1B0GU75	182 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CTAGE15	A4D2H0	777 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	OR2W5	A6NFC9	320 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	AP3B1	O00203	1094 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	PRPF4	O43172	522 aa	Known RBP eCLIP	13.89	□□□□□ -0.19	9e-7	■■□□□ 13.2
IRF3-223	ENST00000599223	SEC24D	O94855	1032 aa	Predicted RBP	13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CCNDBP1	O95273	360 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	SYF2	O95926	243 aa	Known RBP	13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	ANXA5	P08758	320 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CTAGE8	P0CG41	777 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CXCR2	P25025	360 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	SKIV2L2	P42285	1042 aa	Known RBP	13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	SLC1A2	P43004	574 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	MPP1	Q00013	466 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	GPS1	Q13098	491 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CTBP1	Q13363	440 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CASC4	Q6P4E1	433 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	RIPOR1	Q6ZS17	1223 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CTAGE6	Q86UF2	777 aa		13.89	□□□□□ -0.19
IRF3-223	ENST00000599223	CTAGE4	Q8IX94	777 aa		13.89	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms