RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 HKDC1Q2TB90 917 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 OVCH1Q7RTY7 1134 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 CCDC91Q7Z6B0 441 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 CMC1Q7Z7K0 106 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 PLD3Q8IV08 490 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 DTWD1Q8N5C7 304 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 PDPRQ8NCN5 879 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 LRRN4CLQ8ND94 238 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 SLC44A1Q8WWI5 657 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 ISL2Q96A47 359 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 KIAA1191Q96A73 305 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 TM4SF19Q96DZ7 209 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 NDOR1Q9UHB4 597 aa15.38■□□□□ 0.05
TRIM28-213ENST00000598355 TNRC6AQ8NDV7 1962 aaKnown RBP15.38■□□□□ 0.05
TRIM28-213ENST00000598355 VSTM2BA6NLU5 285 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 UMODP07911 640 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 CRABP2P29373 138 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 GGT5P36269 586 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 BCL6P41182 706 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 SNRPNP63162 240 aaKnown RBP15.37■□□□□ 0.05
TRIM28-213ENST00000598355 DLG1Q12959 904 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 KCNAB2Q13303 367 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 COL9A2Q14055 689 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-213ENST00000598355 FAM53BQ14153 422 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 SLC9A5Q14940 896 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 SLMAPQ14BN4 828 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 OR4D1Q15615 310 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 NKG7Q16617 165 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 ADCK2Q7Z695 626 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 CENPLQ8N0S6 344 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-213ENST00000598355 ZDHHC19Q8WVZ1 309 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-213ENST00000598355 IFT81Q8WYA0 676 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 NEIL2Q969S2 332 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 RERGQ96A58 199 aaPredicted RBP15.37■□□□□ 0.05
TRIM28-213ENST00000598355 ARHGAP9Q9BRR9 750 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 TMEM79Q9BSE2 394 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 ABCF3Q9NUQ8 709 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 NXT1Q9UKK6 140 aaKnown RBP15.37■□□□□ 0.05
TRIM28-213ENST00000598355 MAN2B2Q9Y2E5 1009 aa15.37■□□□□ 0.05
TRIM28-213ENST00000598355 TRBC2A0A5B9 178 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 CCDC189A1A4V9 331 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 FOXS1O43638 330 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 ACSL3O95573 720 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 ALDOAP04075 364 aaKnown RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 EIF2S1P05198 315 aaKnown RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 ABHD2P08910 425 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 PIM1P11309 404 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 ALAS2P22557 587 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 GMPRP36959 345 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 FOLR3P41439 243 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 MAGEA12P43365 314 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 REEP5Q00765 189 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 DSG2Q14126 1118 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 CSHL1Q14406 222 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 SSPNQ14714 243 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 MLIPQ5VWP3 458 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 FRA10AC1Q70Z53 315 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 MRGPREQ86SM8 312 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 THOC6Q86W42 341 aaKnown RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 TMEM151BQ8IW70 566 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 SPATA6LQ8N4H0 392 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 AMER3Q8N944 861 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 EIF1ADQ8N9N8 165 aaKnown RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 SLC5A11Q8WWX8 675 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 NACC2Q96BF6 587 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 CABS1Q96KC9 395 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 IP6K3Q96PC2 410 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 ATOH8Q96SQ7 321 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 TXLNGYQ9BZA5 131 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 UNKQ9C0B0 810 aaKnown RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 SPNS1Q9H2V7 528 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 PELI2Q9HAT8 420 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 IGSF5Q9NSI5 407 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 CTSFQ9UBX1 484 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 GPN3Q9UHW5 284 aaPredicted RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 NFU1Q9UMS0 254 aa15.36■□□□□ 0.05
TRIM28-213ENST00000598355 PTRH2Q9Y3E5 179 aaKnown RBP15.36■□□□□ 0.05
TRIM28-213ENST00000598355 TAPBPO15533 448 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 LCMT2O60294 686 aaKnown RBP15.35■□□□□ 0.05
TRIM28-213ENST00000598355 RFPL1O75677 317 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 CEACAM4O75871 244 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 IPO13O94829 963 aaKnown RBP15.35■□□□□ 0.05
TRIM28-213ENST00000598355 OR1D4P47884 311 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 CCR8P51685 355 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 FOXL2P58012 376 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 BMPR2Q13873 1038 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 CPZQ66K79 652 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 TMEM214Q6NUQ4 689 aaKnown RBP15.35■□□□□ 0.05
TRIM28-213ENST00000598355 ISCA2Q86U28 154 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 RAB43Q86YS6 212 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 IFT20Q8IY31 132 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 TCAIMQ8N3R3 496 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 MFSD9Q8NBP5 474 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 EGFL8Q99944 293 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 TRIM55Q9BYV6 548 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 DRC3Q9H069 523 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 SLC25A18Q9H1K4 315 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 ZNF304Q9HCX3 659 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 SNX15Q9NRS6 342 aa15.35■□□□□ 0.05
TRIM28-213ENST00000598355 COPG2Q9UBF2 871 aa15.35■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms