RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 MRFAP1L1Q96HT8 127 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 CYTH2Q99418 400 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 NPAS2Q99743 824 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 PLCD4Q9BRC7 762 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 GSX1Q9H4S2 264 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 MMP25Q9NPA2 562 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 UTP6Q9NYH9 597 aaKnown RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 LRFN1Q9P244 771 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 TTC7AQ9ULT0 858 aaPredicted RBP9.56□□□□□ -0.88
TRIM28-210ENST00000597618 RNF6Q9Y252 685 aa9.56□□□□□ -0.88
TRIM28-210ENST00000597618 IQCF5A8MTL0 148 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 TFECO14948 347 aaPredicted RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 C1orf105O95561 183 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 MBD3O95983 291 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 EZRP15311 586 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 PTGER1P34995 402 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 MARCKSL1P49006 195 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 COPS2P61201 443 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 PTK6Q13882 451 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 IQCB1Q15051 598 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 CEBPEQ15744 281 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 MAPKAPK3Q16644 382 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 NDUFA9Q16795 377 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 PARP6Q2NL67 630 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 AARS2Q5JTZ9 985 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 RNFT1Q5M7Z0 435 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 ANKRD37Q7Z713 158 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 PAQR7Q86WK9 346 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 CPSF7Q8N684 471 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 OR13J1Q8NGT2 312 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 CCDC42Q96M95 316 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 FOPNLQ96NB1 174 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 GBP4Q96PP9 640 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 ALPK1Q96QP1 1244 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 OR2A5Q96R48 311 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 DNAJC7Q99615 494 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 ACAT2Q9BWD1 397 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 UCK2Q9BZX2 261 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 TP63Q9H3D4 680 aaPredicted RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 MRPS30Q9NP92 439 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 SPTLC3Q9NUV7 552 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 ZNHIT6Q9NWK9 470 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 PIH1D1Q9NWS0 290 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 DNAJB12Q9NXW2 375 aaKnown RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 ST6GALNAC2Q9UJ37 374 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 INTUQ9ULD6 942 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 EDARQ9UNE0 448 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 RPH3AQ9Y2J0 694 aaPredicted RBP9.55□□□□□ -0.88
TRIM28-210ENST00000597618 ALG6Q9Y672 507 aa9.55□□□□□ -0.88
TRIM28-210ENST00000597618 STAB1Q9NY15 2570 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 A0A0U1RQJ8 604 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 A0A1B0GTH9 108 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 FAM237BA0A1B0GVD1 139 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 KRT87PA6NCN2 255 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 SOWAHDA6NJG2 315 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 USP27XA6NNY8 438 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 H0YIG0 161 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 GOLGA6L22H0YM25 854 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 PJA2O43164 708 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 MAN1A2O60476 641 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 CCNDBP1O95273 360 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 GOT2P00505 430 aaKnown RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 DNASE1P24855 282 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 RPA3P35244 121 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 ST13P50502 369 aaKnown RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 YBX1P67809 324 aaKnown RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 RELAQ04206 551 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 LTBQ06643 244 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 GTF3C1Q12789 2109 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 P3H1Q32P28 736 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 CCSMST1Q4G0I0 132 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 CCDC38Q502W7 563 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 FASTKD1Q53R41 847 aaKnown RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 PAPD4Q6PIY7 484 aaKnown RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 TAOK1Q7L7X3 1001 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 LINC00523Q86TU6 105 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 BIVMQ86UB2 503 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 KRT222Q8N1A0 295 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 MYRIPQ8NFW9 859 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 OR8K1Q8NGG5 319 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 OR4L1Q8NH43 312 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 MCOLN3Q8TDD5 553 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 SMPDL3AQ92484 453 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 RMND5BQ96G75 393 aaPredicted RBP9.54□□□□□ -0.88
TRIM28-210ENST00000597618 PANX3Q96QZ0 392 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 GOLPH3Q9H4A6 298 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 SYNPO2LQ9H987 977 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 EFR3BQ9Y2G0 817 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 NFS1Q9Y697 457 aa9.54□□□□□ -0.88
TRIM28-210ENST00000597618 IGKV1-8A0A0C4DH67 115 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 PRMT5O14744 637 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 NDC80O14777 642 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 KPNA5O15131 536 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 P2RX6O15547 441 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 PSMD3O43242 534 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 KLK8O60259 260 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 PRMT3O60678 531 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 CTAG2O75638 210 aa9.53□□□□□ -0.88
TRIM28-210ENST00000597618 NSA2O95478 260 aaKnown RBP9.53□□□□□ -0.88
TRIM28-210ENST00000597618 GAS8O95995 478 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms