RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 EMP2P54851 167 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 YBX1P67809 324 aaKnown RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 Q0VFX4 171 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 RAPSNQ13702 412 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 ZNF169Q14929 603 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 HSP90AA5PQ58FG0 334 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 UBE2R2Q712K3 238 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 CISD2Q8N5K1 135 aaKnown RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 ABHD11Q8NFV4 315 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 PSMF1Q92530 271 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 TM4SF19Q96DZ7 209 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 SGPP1Q9BX95 441 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 ZNF700Q9H0M5 742 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 CLK4Q9HAZ1 481 aaKnown RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 ZBTB20Q9HC78 741 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 FBXO6Q9NRD1 293 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 TRPC4Q9UBN4 977 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 PLEKHB1Q9UF11 243 aaPredicted RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 TRMT6Q9UJA5 497 aaKnown RBP13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 SLC5A6Q9Y289 635 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 MAU2Q9Y6X3 613 aa13.77□□□□□ -0.21
SMARCE1-216ENST00000580419 CACNA1DQ01668 2161 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 IGHV1-45A0A0A0MS14 117 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 NSG1A0A0A6YYJ2 146 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 KRT87PA6NCN2 255 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 ANKUB1A6NFN9 424 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 NRP2O60462 931 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 SEMA7AO75326 666 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 ENO2P09104 434 aaPredicted RBP13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 PRR35P0CG20 571 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 EDN3P14138 238 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 IVDP26440 423 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 AVPR1BP47901 424 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 TIAL1Q01085 375 aaKnown RBP eCLIP13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 MORF4L2Q15014 288 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 PPP1R7Q15435 360 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 PRR30Q53SZ7 412 aaPredicted RBP13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 VWA2Q5GFL6 755 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 TMEM151BQ8IW70 566 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 PALM2Q8IXS6 379 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 CAMKVQ8NCB2 501 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 DNAJB14Q8TBM8 379 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 FAR1Q8WVX9 515 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 FAM136AQ96C01 138 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 C19orf60Q96EN9 201 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 THOC3Q96J01 351 aaKnown RBP13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 HAUS8Q9BT25 410 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 TUBB6Q9BUF5 446 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 STOX2Q9P2F5 926 aaPredicted RBP13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 MRPS2Q9Y399 296 aaKnown RBP13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 PCDHGB6Q9Y5F9 930 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 SLC22A7Q9Y694 548 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 CREBBPQ92793 2442 aa13.76□□□□□ -0.21
SMARCE1-216ENST00000580419 GOLGA8MH3BSY2 632 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 NDC80O14777 642 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 LDLRP01130 860 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 MYBL2P10244 700 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 FOXL2P58012 376 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 TBPL1P62380 186 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 MRPL49Q13405 166 aaKnown RBP13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 ELOAQ14241 798 aaKnown RBP13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 NR6A1Q15406 480 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 HKDC1Q2TB90 917 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 TMEM214Q6NUQ4 689 aaKnown RBP13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 LCTLQ6UWM7 567 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 LAPTM4BQ86VI4 370 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 C17orf64Q86WR6 236 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 CPNE9Q8IYJ1 553 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 PDIK1LQ8N165 341 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 MYO1HQ8N1T3 1032 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 GPATCH11Q8N954 259 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 OR4K1Q8NGD4 311 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 ATL1Q8WXF7 558 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 MMABQ96EY8 250 aaPredicted RBP13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 CERS2Q96G23 380 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 IMMP1LQ96LU5 166 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 SLX1AQ9BQ83 275 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 SYNPO2LQ9H987 977 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 PDE10AQ9Y233 779 aa13.75□□□□□ -0.21
SMARCE1-216ENST00000580419 TRAV17A0A0B4J275 112 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 DYTNA2CJ06 578 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 H7BY64 318 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 HAT1O14929 419 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 TSPAN12O95859 305 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 AHSGP02765 367 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 HIST1H2AGP0C0S8 130 aaPredicted RBP13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 HIST1H2ADP20671 130 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 GABRB3P28472 473 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 GRK3P35626 688 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 AGTR2P50052 363 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 IL2P60568 153 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 SKP1P63208 163 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 CSNK1G2P78368 415 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 CUL1Q13616 776 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 EIF2S3LQ2VIR3 472 aaKnown RBP13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 THEMIS2Q5TEJ8 643 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 STEAP4Q687X5 459 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 DUPD1Q68J44 220 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 H3F3CQ6NXT2 135 aa13.74□□□□□ -0.21
SMARCE1-216ENST00000580419 MYO7BQ6PIF6 2116 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms