RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 KRTAP10-12P60413 245 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 ACSM1Q08AH1 577 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 IDI1Q13907 227 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 KYNUQ16719 465 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 RPUSD3Q6P087 351 aaKnown RBP4.54□□□□□ -1.68
NUP88-213ENST00000576862 Q6ZRP5 223 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 IL17RELQ6ZVW7 336 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 KRT74Q7RTS7 529 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 HOGA1Q86XE5 327 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 EGFL6Q8IUX8 553 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 LGI2Q8N0V4 545 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 RAB42Q8N4Z0 105 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 NIPA2Q8N8Q9 360 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 SLC4A11Q8NBS3 891 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 OR4K1Q8NGD4 311 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 OR10G8Q8NGN5 311 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 OR10Q1Q8NGQ4 319 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 MOCOSQ96EN8 888 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 FAM71F1Q96KD3 344 aaPredicted RBP4.54□□□□□ -1.68
NUP88-213ENST00000576862 SYT15Q9BQS2 421 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 TXLNGYQ9BZA5 131 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 CDH20Q9HBT6 801 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 SH3GLB2Q9NR46 395 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 MAN2C1Q9NTJ4 1040 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 ERAP1Q9NZ08 941 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 OR6C2Q9NZP2 312 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 C5AR2Q9P296 337 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 TMCC3Q9ULS5 477 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 RNF215Q9Y6U7 377 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 ADGRB3O60242 1522 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 BCORL1Q5H9F3 1711 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 MYOM2P54296 1465 aa4.54□□□□□ -1.68
NUP88-213ENST00000576862 REREQ9P2R6 1566 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 NDUFAF8A1L188 74 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 URADA6NGE7 173 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 CASTOR2A6NHX0 329 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 EXTL3O43909 919 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 DUS4LO95620 317 aaKnown RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 TBX6O95947 436 aaPredicted RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 OR52Z1P0C646 297 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 MYBL1P10243 752 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 GP1BBP13224 206 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 IRF2P14316 349 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 ACHEP22303 614 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 AZGP1P25311 298 aaKnown RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 TDO2P48775 406 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 ALDH3A2P51648 485 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 CLDN15P56746 228 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 GSDMDP57764 484 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 KRT83P78385 493 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 CALD1Q05682 793 aaKnown RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 RBPJQ06330 500 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 PRPF4BQ13523 1007 aaKnown RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 ARMC4Q5T2S8 1044 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 DET1Q7L5Y6 550 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 OR8H2Q8N162 312 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 ARL6IP6Q8N6S5 226 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 VANGL1Q8TAA9 524 aaPredicted RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 OTUB1Q96FW1 271 aaPredicted RBP4.53□□□□□ -1.68
NUP88-213ENST00000576862 SYT11Q9BT88 431 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 SLC2A11Q9BYW1 496 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 ANKRD2Q9GZV1 360 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 PRSS21Q9Y6M0 314 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 PIK3C2GO75747 1445 aa4.53□□□□□ -1.68
NUP88-213ENST00000576862 SYNMO15061 1565 aa4.53□□□□□ -1.69
NUP88-213ENST00000576862 KAT6BQ8WYB5 2073 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 ERVK-7P63135 1459 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 SCAF11Q99590 1463 aaKnown RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 GTPBP10A4D1E9 387 aaKnown RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 H7C423 109 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 SEC24AO95486 1093 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 VTNP04004 478 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 DNTTP04053 509 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 SAGP10523 405 aaPredicted RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 DPEP1P16444 411 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 HOXC13P31276 330 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 VAMP7P51809 220 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 ZNF131P52739 623 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 KLC1Q07866 573 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 RASA2Q15283 850 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 EXT1Q16394 746 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 PHKG1Q16816 387 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 SGSM1Q2NKQ1 1148 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 CCDC158Q5M9N0 1113 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 ZNF613Q6PF04 617 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 FIP1L1Q6UN15 594 aaKnown RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 G2E3Q7L622 706 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 PI4KAP1Q8N8J0 262 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 SMAP2Q8WU79 429 aaPredicted RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 APOBEC4Q8WW27 367 aaKnown RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 ZNF689Q96CS4 500 aaPredicted RBP4.52□□□□□ -1.69
NUP88-213ENST00000576862 HDAC11Q96DB2 347 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 CFAP57Q96MR6 1250 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 CDK19Q9BWU1 502 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 DNAJC4Q9NNZ3 241 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 TRPM1Q7Z4N2 1603 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 MADDQ8WXG6 1647 aa4.52□□□□□ -1.69
NUP88-213ENST00000576862 C15orf61A6NNL5 157 aa4.51□□□□□ -1.69
NUP88-213ENST00000576862 O00370 1275 aa4.51□□□□□ -1.69
NUP88-213ENST00000576862 CLDN4O14493 209 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms