RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 C3orf38Q5JPI3 329 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 GRHL2Q6ISB3 625 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 OR52B6Q8NGF0 335 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 MGARPQ8TDB4 240 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 PAIP2Q9BPZ3 127 aaKnown RBP16.37■□□□□ 0.21
NUP88-210ENST00000574867 GATA5Q9BWX5 397 aaPredicted RBP16.37■□□□□ 0.21
NUP88-210ENST00000574867 DRC3Q9H069 523 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 MLXIPLQ9NP71 852 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 FBXO8Q9NRD0 319 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 GEMIN8Q9NWZ8 242 aaKnown RBP16.37■□□□□ 0.21
NUP88-210ENST00000574867 OCIAD1Q9NX40 245 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 PCDHGA8Q9Y5G5 932 aa16.37■□□□□ 0.21
NUP88-210ENST00000574867 KCNE1BA0A087WTH5 132 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 NPHS1O60500 1241 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 SRPX2O60687 465 aaPredicted RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 PRAMEF4O60810 478 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 FGF3P11487 239 aaPredicted RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 GSTM2P28161 218 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 FOXM1Q08050 763 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 GPR19Q15760 415 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 HIST2H2ACQ16777 129 aaPredicted RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 DEFB110Q30KQ9 67 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 GGTA1PQ4G0N0 100 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 PRAMEF9Q5VWM5 478 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 HIST2H2AA3Q6FI13 130 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 RPS27LQ71UM5 84 aaKnown RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 MCATQ8IVS2 390 aaKnown RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 L3MBTL4Q8NA19 623 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 PPP1R14CQ8TAE6 165 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 TRPC4APQ8TEL6 797 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 UBE2E3Q969T4 207 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 ZNF501Q96CX3 271 aaPredicted RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 CNDP1Q96KN2 507 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 OR6C1Q96RD1 312 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 NT5DC2Q9H857 520 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 SATB2Q9UPW6 733 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 DCHS1Q96JQ0 3298 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 A0A0J9YVX5 310 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 TMEM150CB9EJG8 249 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 CLDN9O95484 217 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 CCL4P13236 92 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 PKNOX1P55347 436 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 MEF2AQ02078 507 aaPredicted RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 CYP4F3Q08477 520 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 TCTE1Q5JU00 501 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 FBXO42Q6P3S6 717 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 TMIGD1Q6UXZ0 262 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 TTLQ8NG68 377 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 RERGQ96A58 199 aaPredicted RBP16.36■□□□□ 0.21
NUP88-210ENST00000574867 SEC16BQ96JE7 1060 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 OR2A5Q96R48 311 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 SPNS1Q9H2V7 528 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 POLR1BQ9H9Y6 1135 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 ENAMQ9NRM1 1142 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 PISDQ9UG56 409 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 RARRES3Q9UL19 164 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 WASF3Q9UPY6 502 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 PCDHGA4Q9Y5G9 962 aa16.36■□□□□ 0.21
NUP88-210ENST00000574867 KIF26BQ2KJY2 2108 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 FEZF1A0PJY2 475 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 AGRPO00253 132 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 NEFHP12036 1026 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 HGFP14210 728 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 CD22P20273 847 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 AHRP35869 848 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 BCL6P41182 706 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 SCTRP47872 440 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 MYLK4Q86YV6 388 aaPredicted RBP16.35■□□□□ 0.21
NUP88-210ENST00000574867 PLD3Q8IV08 490 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 MFSD9Q8NBP5 474 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 OR6Y1Q8NGX8 325 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 ZNF285Q96NJ3 590 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 DDA1Q9BW61 102 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 NRSN2Q9GZP1 204 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 ACSS2Q9NR19 701 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 SLC39A1Q9NY26 324 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 SERTAD3Q9UJW9 196 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 KNTC1P50748 2209 aa16.35■□□□□ 0.21
NUP88-210ENST00000574867 A0A1W2PNU3 283 aaPredicted RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 WDR91A4D1P6 747 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 POLR1CO15160 346 aaPredicted RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 OR1F1O43749 312 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 SERPINE1P05121 402 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 FGF5P12034 268 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ITIH1P19827 911 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 GRK2P25098 689 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 SERPINB1P30740 379 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ITGA1P56199 1179 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 GALNT1Q10472 559 aaPredicted RBP16.34■□□□□ 0.21
NUP88-210ENST00000574867 RCN2Q14257 317 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 CHI3L2Q15782 390 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 FRMPD2BQ6IN97 320 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 MED27Q6P2C8 311 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 CEACAM20Q6UY09 585 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 GPRIN3Q6ZVF9 776 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 MILR1Q7Z6M3 343 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 PPP1R3BQ86XI6 285 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 TRIM42Q8IWZ5 723 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 GPR135Q8IZ08 494 aa16.34■□□□□ 0.21
NUP88-210ENST00000574867 ARFGAP2Q8N6H7 521 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms