RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 OR2T11Q8NH01 316 aa23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 AHCYL2Q96HN2 611 aaKnown RBP23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 MTERF1Q99551 399 aaKnown RBP23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 EDEM2Q9BV94 578 aa23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 TMEM184CQ9NVA4 438 aa23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 GIMAP2Q9UG22 337 aa23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 PCDHGB2Q9Y5G2 931 aa23.09■■□□□ 1.29
ATPAF1-213ENST00000574428 HAT1O14929 419 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 CASC3O15234 703 aaKnown RBP23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 B4GAT1O43505 415 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 SLC34A2O95436 690 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 HOXB3P14651 431 aaPredicted RBP23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 TUBB3Q13509 450 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 RBBP5Q15291 538 aaKnown RBP23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 PROX2Q3B8N5 592 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 XKR7Q5GH72 579 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 PERM1Q5SV97 790 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 NXNQ6DKJ4 435 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 ZNF425Q6IV72 752 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 LAS2Q8IYD9 372 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 OR6C4Q8NGE1 309 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 NCSTNQ92542 709 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 MAELQ96JY0 434 aaKnown RBP23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 PRM3Q9NNZ6 103 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 PARD6AQ9NPB6 346 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 TCF7L2Q9NQB0 619 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 SNX7Q9UNH6 387 aa23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 APOBEC2Q9Y235 224 aaKnown RBP23.08■■□□□ 1.29
ATPAF1-213ENST00000574428 A0A0J9YY10 115 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 GRK6P43250 576 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 GFERP55789 205 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 FAM92BQ6ZTR7 304 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 ACAD11Q709F0 780 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 SPRED1Q7Z699 444 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 ALYREFQ86V81 257 aaKnown RBP23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 HUS1BQ8NHY5 278 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 REPS1Q96D71 796 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 PLCD4Q9BRC7 762 aa23.07■■□□□ 1.28
ATPAF1-213ENST00000574428 EME2A4GXA9 379 aaPredicted RBP23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 CAPN5O15484 640 aaPredicted RBP23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 HRH2P25021 359 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 CXCR2P25025 360 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 DAB2P98082 770 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 HMGCS1Q01581 520 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 LSM12Q3MHD2 195 aaKnown RBP23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 TRPM8Q7Z2W7 1104 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 PAQR7Q86WK9 346 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 UBE2E3Q969T4 207 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 TUBGCP3Q96CW5 907 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 TGM7Q96PF1 710 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 CCT7Q99832 543 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 ACPTQ9BZG2 426 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 ZMYND15Q9H091 742 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 AKTIPQ9H8T0 292 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 HEY2Q9UBP5 337 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 MUC6Q6W4X9 2439 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 E9PBE3 544 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 ZW10O43264 779 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 OR1F1O43749 312 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 DUX1O43812 170 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 KLHL41O60662 606 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 PRAMEF10O60809 474 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 CKMT1AP12532 417 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 PNLIPP16233 465 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 CSRP2Q16527 193 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 SPRED3Q2MJR0 410 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 INAVAQ3KP66 663 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 FCRL6Q6DN72 434 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 DBX2Q6ZNG2 339 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 RNF165Q6ZSG1 346 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 Q6ZSR9 355 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 TRIM46Q7Z4K8 759 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 ANKRD53Q8N9V6 530 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 PFDN4Q9NQP4 134 aa23.06■■□□□ 1.28
ATPAF1-213ENST00000574428 TRBC2A0A5B9 178 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 MAGEB17A8MXT2 336 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 DLL1O00548 723 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 FLRT2O43155 660 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 TNFSF14O43557 240 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 LCMT2O60294 686 aaKnown RBP23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CDH3P22223 829 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CD1CP29017 333 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CSF2RBP32927 897 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 GRK3P35626 688 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 BCL6P41182 706 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CORO7P57737 925 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CYP4F2P78329 520 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 GPLD1P80108 840 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 FIGLAQ6QHK4 219 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 USP53Q70EK8 1073 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 VN1R5Q7Z5H4 357 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 ACTRT2Q8TDY3 377 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 NAT6Q93015 286 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CCDC3Q9BQI4 270 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 SEMA6CQ9H3T2 930 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 EPB41L1Q9H4G0 881 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 TMEM9BQ9NQ34 198 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 RIC8BQ9NVN3 520 aa23.05■■□□□ 1.28
ATPAF1-213ENST00000574428 CCL27Q9Y4X3 112 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms