RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CACNA2D3Q8IZS8 1091 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 NLGN4XQ8N0W4 816 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 C4orf33Q8N1A6 199 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 SNX31Q8N9S9 440 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 NLGN4YQ8NFZ3 816 aaPredicted RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 TMEM109Q9BVC6 243 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 IRAK4Q9NWZ3 460 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 DHCR7Q9UBM7 475 aaKnown RBP18.69■□□□□ 0.58
CLN3-225ENST00000566824 SSUH2Q9Y2M2 353 aa18.69■□□□□ 0.58
CLN3-225ENST00000566824 ITPR1Q14643 2758 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 SCN3AQ9NY46 2000 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 A0A087WV48 116 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 SYCE1LA8MT33 242 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 CTIFO43310 598 aaKnown RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 CPNE3O75131 537 aaKnown RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 ITGAXP20702 1163 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 F8A1P23610 371 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 CCR8P51685 355 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 TLE3Q04726 772 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 CDC16Q13042 620 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 NAA25Q14CX7 972 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 PRTGQ2VWP7 1150 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 ZNF385CQ66K41 422 aaPredicted RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 GPR135Q8IZ08 494 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 PTGR2Q8N8N7 351 aaPredicted RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 CLIP3Q96DZ5 547 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 PHF21BQ96EK2 531 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 CRELD1Q96HD1 420 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 ZIM3Q96PE6 472 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 MRPL57Q9BQC6 102 aaKnown RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 ROPN1BQ9BZX4 212 aaPredicted RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 MRPL46Q9H2W6 279 aaKnown RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 CNOT10Q9H9A5 744 aaKnown RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 ROPN1Q9HAT0 212 aaPredicted RBP18.68■□□□□ 0.58
CLN3-225ENST00000566824 ACSS2Q9NR19 701 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 KCNE2Q9Y6J6 123 aa18.68■□□□□ 0.58
CLN3-225ENST00000566824 KMT2BQ9UMN6 2715 aaPredicted RBP18.67■□□□□ 0.58
CLN3-225ENST00000566824 CCDC189A1A4V9 331 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 FITM1A5D6W6 292 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 CCDC151A5D8V7 595 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 SRPX2O60687 465 aaPredicted RBP18.67■□□□□ 0.58
CLN3-225ENST00000566824 IPO13O94829 963 aaKnown RBP18.67■□□□□ 0.58
CLN3-225ENST00000566824 CREB1P16220 341 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 CD22P20273 847 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 HRH2P25021 359 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 ALDH18A1P54886 795 aaKnown RBP18.67■□□□□ 0.58
CLN3-225ENST00000566824 REEP5Q00765 189 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 RELAQ04206 551 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 PDK4Q16654 411 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 RPS27LQ71UM5 84 aaKnown RBP18.67■□□□□ 0.58
CLN3-225ENST00000566824 TRABD2AQ86V40 505 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 TMEM151BQ8IW70 566 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 ARHGEF39Q8N4T4 335 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 CSNK1A1LQ8N752 337 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 MOCOSQ96EN8 888 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 C10orf90Q96M02 699 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 PELI2Q9HAT8 420 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 ENAMQ9NRM1 1142 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 MRPS2Q9Y399 296 aaKnown RBP18.67■□□□□ 0.58
CLN3-225ENST00000566824 PCDHGA4Q9Y5G9 962 aa18.67■□□□□ 0.58
CLN3-225ENST00000566824 A8MT66 165 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 MEN1O00255 615 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 TERTO14746 1132 aaKnown RBP18.66■□□□□ 0.58
CLN3-225ENST00000566824 C1GALT1C1LP0DN25 315 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 LIFP15018 202 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 KRT4P19013 534 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 STAT5AP42229 794 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 SLC18A2Q05940 514 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 MAP7Q14244 749 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 FAM219BQ5XKK7 198 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 ADNP2Q6IQ32 1131 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 TLDC1Q6P9B6 456 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 LRRC70Q7Z2Q7 622 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 DSELQ8IZU8 1212 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 ESX1Q8N693 406 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 METTL27Q8N6F8 245 aaPredicted RBP18.66■□□□□ 0.58
CLN3-225ENST00000566824 TEX9Q8N6V9 391 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 ANKRD53Q8N9V6 530 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 MFSD9Q8NBP5 474 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 CT55Q8WUE5 264 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 HNRNPLLQ8WVV9 542 aaKnown RBP18.66■□□□□ 0.58
CLN3-225ENST00000566824 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.66■□□□□ 0.58
CLN3-225ENST00000566824 DPH1Q9BZG8 443 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 CHST8Q9H2A9 424 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 LHX9Q9NQ69 397 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 GEMIN8Q9NWZ8 242 aaKnown RBP18.66■□□□□ 0.58
CLN3-225ENST00000566824 OPTCQ9UBM4 332 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 IL17BQ9UHF5 180 aa18.66■□□□□ 0.58
CLN3-225ENST00000566824 RUVBL1Q9Y265 456 aaKnown RBP18.66■□□□□ 0.58
CLN3-225ENST00000566824 KCNE1BA0A087WTH5 132 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 HYKKA2RU49 373 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 K7EPI3 171 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 RRP8O43159 456 aaKnown RBP18.65■□□□□ 0.58
CLN3-225ENST00000566824 OR1F1O43749 312 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 DLX3O60479 287 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 CAPN1P07384 714 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 GSTA1P08263 222 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 GNAZP19086 355 aa18.65■□□□□ 0.58
CLN3-225ENST00000566824 EEF1DP29692 281 aaKnown RBP18.65■□□□□ 0.58
CLN3-225ENST00000566824 RPS15AP62244 130 aaKnown RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms