RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 ZFATQ9P243 1243 aa19.72■□□□□ 0.75
CLN3-219ENST00000565778 UBR5O95071 2799 aaPredicted RBP19.72■□□□□ 0.75
CLN3-219ENST00000565778 IGLV3-12A0A075B6K2 115 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 NDC80O14777 642 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 FOXS1O43638 330 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 STATHP02808 62 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 CCND1P24385 295 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 SLC26A3P40879 764 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 RPL21P46778 160 aaKnown RBP19.71■□□□□ 0.75
CLN3-219ENST00000565778 RPS15AP62244 130 aaKnown RBP19.71■□□□□ 0.75
CLN3-219ENST00000565778 IGFL3Q6UXB1 125 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 Q8NA96 180 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 BBOF1Q8ND07 529 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 OLFM1Q99784 485 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 ZBTB20Q9HC78 741 aaPredicted RBP19.71■□□□□ 0.75
CLN3-219ENST00000565778 B3GNT3Q9Y2A9 372 aa19.71■□□□□ 0.75
CLN3-219ENST00000565778 FLNBO75369 2602 aaKnown RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 KCNE1BA0A087WTH5 132 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 TP73O15350 636 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 P2RX6O15547 441 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 GUCA1CO95843 209 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 TSPAN12O95859 305 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 HEXBP07686 556 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 ACPPP15309 386 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 NPPBP16860 134 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 FDXRP22570 491 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 CXCR2P25025 360 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 VARSP26640 1264 aaKnown RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 AVPR1BP47901 424 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 CSNK1G2P78368 415 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 FAM53BQ14153 422 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 FRG1Q14331 258 aaKnown RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 FASTKD3Q14CZ7 662 aaKnown RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 AGAP7PQ5VUJ5 663 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 DUPD1Q68J44 220 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 CAPN13Q6MZZ7 669 aaPredicted RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 STRA8Q7Z7C7 330 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 GALNT11Q8NCW6 608 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 C8orf44Q96CB5 159 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 THAP11Q96EK4 314 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 THOC3Q96J01 351 aaKnown RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 AGAP4Q96P64 663 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 MACROD1Q9BQ69 325 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 LHPPQ9H008 270 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 ILKAPQ9H0C8 392 aaPredicted RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 MKKSQ9NPJ1 570 aaPredicted RBP19.7■□□□□ 0.74
CLN3-219ENST00000565778 ANKRD12Q6UB98 2062 aa19.7■□□□□ 0.74
CLN3-219ENST00000565778 ASH1LQ9NR48 2969 aaKnown RBP19.69■□□□□ 0.74
CLN3-219ENST00000565778 FEZF1A0PJY2 475 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 IDSB3KWA1 339 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 MAP2K7O14733 419 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 FANCGO15287 622 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 GNLYP22749 145 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 CASQ1P31415 396 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 GRK3P35626 688 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 AP1S2P56377 157 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 CALCOCO2Q13137 446 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 SYT16Q17RD7 645 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 PRR30Q53SZ7 412 aaPredicted RBP19.69■□□□□ 0.74
CLN3-219ENST00000565778 ATG9BQ674R7 924 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 FAAH2Q6GMR7 532 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 LCTLQ6UWM7 567 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 MAATS1Q7Z4T9 603 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 ZBED8Q8IZ13 594 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 ARHGEF39Q8N4T4 335 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 AMER3Q8N944 861 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 ATL1Q8WXF7 558 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 PYCR2Q96C36 320 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 MESP1Q9BRJ9 268 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 HAUS8Q9BT25 410 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 SGPP1Q9BX95 441 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 DPH5Q9H2P9 285 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 ZNF160Q9HCG1 818 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 C14orf105Q9NVL8 296 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 MOCS1Q9NZB8 636 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 SH2B3Q9UQQ2 575 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 PSAT1Q9Y617 370 aa19.69■□□□□ 0.74
CLN3-219ENST00000565778 FAM187AA6NFU0 413 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 E7ESA3 106 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 LCMT2O60294 686 aaKnown RBP19.68■□□□□ 0.74
CLN3-219ENST00000565778 HPP00738 406 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 CDH1P12830 882 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 MAT1AQ00266 395 aaKnown RBP19.68■□□□□ 0.74
CLN3-219ENST00000565778 ZC3HC1Q86WB0 502 aaKnown RBP19.68■□□□□ 0.74
CLN3-219ENST00000565778 IQCKQ8N0W5 287 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 CISD2Q8N5K1 135 aaKnown RBP19.68■□□□□ 0.74
CLN3-219ENST00000565778 CAMKVQ8NCB2 501 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 SPATA4Q8NEY3 305 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 OR9A4Q8NGU2 314 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 PYROXD1Q8WU10 500 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 PDLIM5Q96HC4 596 aaKnown RBP19.68■□□□□ 0.74
CLN3-219ENST00000565778 ERP44Q9BS26 406 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 TGIF2Q9GZN2 237 aa19.68■□□□□ 0.74
CLN3-219ENST00000565778 MRPS2Q9Y399 296 aaKnown RBP19.68■□□□□ 0.74
CLN3-219ENST00000565778 NSG1A0A0A6YYJ2 146 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 UQCRFS1P47985 274 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 GLRBP48167 497 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 Q0VFX4 171 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 TMEM207Q6UWW9 146 aa19.67■□□□□ 0.74
CLN3-219ENST00000565778 CAPN12Q6ZSI9 719 aa19.67■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 104.9 ms