RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 TP63Q9H3D4 680 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 ARNT2Q9HBZ2 717 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 LMBRD1Q9NUN5 540 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 TTC7AQ9ULT0 858 aaPredicted RBP6.91□□□□□ -1.3
VPS4A-203ENST00000564399 CAPN11Q9UMQ6 739 aa6.91□□□□□ -1.3
VPS4A-203ENST00000564399 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP6.91□□□□□ -1.33e-6■□□□□ 9.8
VPS4A-203ENST00000564399 EML6Q6ZMW3 1958 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 hCG_1818297A0A087WSY0 165 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CCDC162PA2VCL2 907 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 KRT87PA6NCN2 255 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 SOWAHDA6NJG2 315 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 IQCF5A8MTL0 148 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 TXNDC9O14530 226 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 NDC80O14777 642 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 PROM1O43490 865 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 FOXS1O43638 330 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 AKR1B10O60218 316 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 KLK8O60259 260 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 NME2P1O60361 137 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 PRMT3O60678 531 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 GPC4O75487 556 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CTAG2O75638 210 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 NEURL1O76050 574 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 NME2P22392 152 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CTNNA2P26232 953 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 FOXN2P32314 431 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 RFC3P40938 356 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 AVPR1BP47901 424 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 EFNA3P52797 238 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 YBX1P67809 324 aaKnown RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 EXT1Q16394 746 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 NDUFA9Q16795 377 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CCSMST1Q4G0I0 132 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 TMEM198Q66K66 360 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 DARS2Q6PI48 645 aaKnown RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 BBS12Q6ZW61 710 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ACAD11Q709F0 780 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ANKRD37Q7Z713 158 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CDKL3Q8IVW4 592 aaPredicted RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ZZZ3Q8IYH5 903 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 RCOR2Q8IZ40 523 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 RPRMLQ8N4K4 120 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 LRRN4CLQ8ND94 238 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ACRBPQ8NEB7 543 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 MYRIPQ8NFW9 859 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 OR5M3Q8NGP4 307 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 GOT1L1Q8NHS2 421 aaPredicted RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 M1APQ8TC57 530 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 LKAAEAR1Q8TD35 194 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 MCOLN3Q8TDD5 553 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 TMEM125Q96AQ2 219 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 IQCDQ96DY2 449 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 FOPNLQ96NB1 174 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ALPK1Q96QP1 1244 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 NPAS2Q99743 824 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 MDFIQ99750 246 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 OLFM1Q99784 485 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 GPATCH1Q9BRR8 931 aaKnown RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CLEC4MQ9H2X3 399 aaPredicted RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 CDCP1Q9H5V8 836 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 MRPS30Q9NP92 439 aaKnown RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF358Q9NW07 568 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 PIH1D1Q9NWS0 290 aaKnown RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 UTP6Q9NYH9 597 aaKnown RBP6.9□□□□□ -1.3
VPS4A-203ENST00000564399 KLK4Q9Y5K2 254 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 HRH3Q9Y5N1 445 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 MRFAP1Q9Y605 127 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ALG6Q9Y672 507 aa6.9□□□□□ -1.3
VPS4A-203ENST00000564399 ZNF469Q96JG9 3925 aaPredicted RBP6.9□□□□□ -1.31
VPS4A-203ENST00000564399 A0A0U1RQJ8 604 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 A0A1W2PPV9 198 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 OR2W5A6NFC9 320 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 KIAA1324LA8MWY0 1029 aaPredicted RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 KLRC4-KLRK1H3BQV0 150 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 APOC4-APOC2K7ER74 178 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PSTPIP1O43586 416 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 HS6ST1O60243 411 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PHF2O75151 1096 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PDE9AO76083 593 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 C1orf105O95561 183 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 APOC2P02655 101 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 INHBBP09529 407 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 RBP3P10745 1247 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PKMP14618 531 aaKnown RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 AOAHP28039 575 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 RPA3P35244 121 aaPredicted RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PPARGP37231 505 aaPredicted RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 XCR1P46094 333 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 CYB561P49447 251 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 AGTR2P50052 363 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 NUP107P57740 925 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 EIF3EP60228 445 aaKnown RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PTK6Q13882 451 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 FAM53BQ14153 422 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 CCDC38Q502W7 563 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 SFT2D3Q587I9 215 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 ZNF468Q5VIY5 522 aaPredicted RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 ARHGAP11AQ6P4F7 1023 aa6.89□□□□□ -1.31
VPS4A-203ENST00000564399 PAPD4Q6PIY7 484 aaKnown RBP6.89□□□□□ -1.31
VPS4A-203ENST00000564399 CLEC9AQ6UXN8 241 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms