RNA–Protein interactions for RNA: ENST00000563418.2

CLK3-212, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 10,498 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-212ENST00000563418 MIR1-1HGQ9H1L0 117 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 SIX2Q9NPC8 291 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 NUDT4Q9NZJ9 180 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 TBX22Q9Y458 520 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 PARP4Q9UKK3 1724 aaKnown RBP6.1□□□□□ -1.43
CLK3-212ENST00000563418 MRC1P22897 1456 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 A0A1W2PQL4 384 aaPredicted RBP6.1□□□□□ -1.43
CLK3-212ENST00000563418 TMEM198Q66K66 360 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 MSANTD2Q6P1R3 559 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 PIWIL3Q7Z3Z3 882 aaKnown RBP6.1□□□□□ -1.43
CLK3-212ENST00000563418 LDHDQ86WU2 507 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 GEMIN6Q8WXD5 167 aaKnown RBP6.1□□□□□ -1.43
CLK3-212ENST00000563418 MXRA8Q9BRK3 442 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 CPVLQ9H3G5 476 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 PRDM12Q9H4Q4 367 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 MS4A12Q9NXJ0 267 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 MROH6A6NGR9 719 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 NFYAP23511 347 aaPredicted RBP6.1□□□□□ -1.43
CLK3-212ENST00000563418 IDUAP35475 653 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 GHRHRQ02643 423 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 CDK5R2Q13319 367 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 FAM214AQ32MH5 1076 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 C14orf28Q4W4Y0 310 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 CRTC1Q6UUV9 634 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 C1orf186Q6ZWK4 172 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 TMEM192Q8IY95 271 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 RAB3CQ96E17 227 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 POTEKPQ9BYX7 375 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 ZDHHC5Q9C0B5 715 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 MYNNQ9NPC7 610 aa6.1□□□□□ -1.43
CLK3-212ENST00000563418 AGAP14A8MT82 685 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 H3BUI4 141 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 CDK2AP1O14519 115 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 PPP1R2P9O14990 202 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 KCNJ13O60928 360 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 TMEM63AO94886 807 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 MAPK3P27361 379 aaPredicted RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 GTF2BQ00403 316 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 KLF1Q13351 362 aaPredicted RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 OAFQ86UD1 273 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 FSTL5Q8N475 847 aaPredicted RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 GMCL1P1Q8NEA9 526 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 FCRL4Q96PJ5 515 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 RBM14Q96PK6 669 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 KLQ9UEF7 1012 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 DIP2AQ14689 1571 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 OR7A17O14581 309 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 JCHAINP01591 159 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 FGRP09769 529 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 BMP7P18075 431 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 GADD45AP24522 165 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 GCNT6Q5T4J0 391 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 ZNF691Q5VV52 312 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 INTS5Q6P9B9 1019 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 CES3Q6UWW8 571 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 GAREM2Q75VX8 874 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 SLC38A6Q8IZM9 456 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 ZNF680Q8NEM1 530 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 AKR7LQ8NHP1 331 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 ST8SIA2Q92186 375 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 USP7Q93009 1102 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 USB1Q9BQ65 265 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 WDCPQ9H6R7 721 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 SLC28A3Q9HAS3 691 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 LRTM1Q9HBL6 345 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 N4BP2Q86UW6 1770 aaPredicted RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 RETP07949 1114 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 ZNF7P17097 686 aaPredicted RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 DDX39BQ13838 428 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 GRM3Q14832 879 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 TMEM132BQ14DG7 1078 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 TATDN1Q6P1N9 297 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 BEST3Q8N1M1 668 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 CLDN22Q8N7P3 220 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 PXT1Q8NFP0 134 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 OR2L5Q8NG80 312 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 NEIL3Q8TAT5 605 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 SLC41A3Q96GZ6 507 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 BTF3L4Q96K17 158 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 MMP19Q99542 508 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 CNTN3Q9P232 1028 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 TRPS1Q9UHF7 1281 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 BORCS7-ASMTA0A0B4J1R7 106 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 PRAMEF22A3QJZ6 481 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 EEF1E1O43324 174 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 SIGLEC6O43699 453 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 PNPP00491 289 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 INHAP05111 366 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 GTF2F2P13984 249 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 HTR1BP28222 390 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 RPL7AP62424 266 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 UGT8Q16880 541 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 TOR1AIP1Q5JTV8 583 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 TEX261Q6UWH6 196 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 ZNF704Q6ZNC4 412 aaPredicted RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 C1orf52Q8N6N3 182 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 OR4F6Q8NGB9 312 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 MRPL45Q9BRJ2 306 aaKnown RBP6.09□□□□□ -1.43
CLK3-212ENST00000563418 TMED9Q9BVK6 235 aa6.09□□□□□ -1.43
CLK3-212ENST00000563418 DERAQ9Y315 318 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms