RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 IL1RL2Q9HB29 575 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 MAP10Q9P2G4 905 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 SLC7A8Q9UHI5 535 aa20.45■□□□□ 0.86
CLN3-209ENST00000561689 CACNA1IQ9P0X4 2223 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 A0A1W2PP18 115 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 ASPDHA6ND91 283 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 ISM1B1AKI9 464 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 SAP18O00422 153 aaKnown RBP20.44■□□□□ 0.86
CLN3-209ENST00000561689 BTN3A3O00478 584 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 SORBS2O94875 1100 aaKnown RBP20.44■□□□□ 0.86
CLN3-209ENST00000561689 NME1P15531 152 aaKnown RBP20.44■□□□□ 0.86
CLN3-209ENST00000561689 DPP6P42658 865 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 ACSM2AQ08AH3 577 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 ACSM2BQ68CK6 577 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 PLD3Q8IV08 490 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.44■□□□□ 0.86
CLN3-209ENST00000561689 PGAM4Q8N0Y7 254 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 OR4K1Q8NGD4 311 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 SLC37A2Q8TED4 501 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 DNASE2BQ8WZ79 361 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 CDRT15Q96T59 188 aa20.44■□□□□ 0.86
CLN3-209ENST00000561689 MRPS30Q9NP92 439 aaKnown RBP20.44■□□□□ 0.86
CLN3-209ENST00000561689 ATP6V1G2O95670 118 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 XRCC1P18887 633 aaPredicted RBP20.43■□□□□ 0.86
CLN3-209ENST00000561689 MAPK1P28482 360 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 RAP1GDS1P52306 607 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 DGKQP52824 942 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 CYP4F2P78329 520 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 CSNK1G2P78368 415 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 C10orf62Q5T681 223 aaPredicted RBP20.43■□□□□ 0.86
CLN3-209ENST00000561689 ADGRF3Q8IZF5 1079 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 FBXL6Q8N531 539 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 C1orf52Q8N6N3 182 aaKnown RBP20.43■□□□□ 0.86
CLN3-209ENST00000561689 ANKRD53Q8N9V6 530 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 PCYOX1LQ8NBM8 494 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 OR2L3Q8NG85 312 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 EGLN2Q96KS0 407 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 SLC39A3Q9BRY0 314 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 TMEM45AQ9NWC5 275 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 NDE1Q9NXR1 346 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 B4DGG1 531 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 PRPS2P11908 318 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 CXCR2P25025 360 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 HOXA6P31267 233 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 PIK3CBP42338 1070 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 NXPH1P58417 271 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 PSME3P61289 254 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 UBE2IP63279 158 aaKnown RBP20.43■□□□□ 0.86
CLN3-209ENST00000561689 REEP5Q00765 189 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 SNCBQ16143 134 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 LMX1AQ8TE12 382 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 ZDHHC1Q8WTX9 485 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 TSPEARQ8WU66 669 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 WDR60Q8WVS4 1066 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 ZBTB18Q99592 522 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 SLC6A20Q9NP91 592 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 KLHL20Q9Y2M5 609 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 PCDHGA7Q9Y5G6 932 aa20.43■□□□□ 0.86
CLN3-209ENST00000561689 KIR2DS5A0A0G2JLQ3 304 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 A0A0G2JNG1 304 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 KIR2DS3K7RE56 304 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 OR1F1O43749 312 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 SRSF5Q13243 272 aaKnown RBP20.42■□□□□ 0.86
CLN3-209ENST00000561689 KIR2DS5Q14953 304 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 PAGE3Q5JUK9 113 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 WDR45BQ5MNZ6 344 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 BNC2Q6ZN30 1099 aaPredicted RBP20.42■□□□□ 0.86
CLN3-209ENST00000561689 HPS6Q86YV9 775 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 CHTF18Q8WVB6 975 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 CCDC124Q96CT7 223 aaKnown RBP20.42■□□□□ 0.86
CLN3-209ENST00000561689 C11orf24Q96F05 449 aaPredicted RBP20.42■□□□□ 0.86
CLN3-209ENST00000561689 FCRL1Q96LA6 429 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 POT1Q9NUX5 634 aa20.42■□□□□ 0.86
CLN3-209ENST00000561689 RUVBL1Q9Y265 456 aaKnown RBP20.42■□□□□ 0.86
CLN3-209ENST00000561689 ANKDD1BA6NHY2 528 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 OR5K4A6NMS3 321 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 BCAT2O15382 392 aaPredicted RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 LRATO95237 230 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 RAE1P78406 368 aaKnown RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 PHEXP78562 749 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 KPNB1Q14974 876 aaKnown RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 TLR1Q15399 786 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 KIAA1614Q5VZ46 1190 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 PGM2L1Q6PCE3 622 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 OR10G6Q8NH81 332 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 GFM2Q969S9 779 aaKnown RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 DPH7Q9BTV6 452 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 PRMT8Q9NR22 394 aaPredicted RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 SDK1Q7Z5N4 2213 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 FANCMQ8IYD8 2048 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 OR6C74A6NCV1 312 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 LCMT2O60294 686 aaKnown RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 ENTPD5O75356 428 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 EEDO75530 441 aaKnown RBP20.41■□□□□ 0.86
CLN3-209ENST00000561689 ACPPP15309 386 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 CLDN8P56748 225 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 ABATP80404 500 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 ELOCQ15369 112 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 FAM174BQ3ZCQ3 159 aa20.41■□□□□ 0.86
CLN3-209ENST00000561689 SLC2A7Q6PXP3 512 aa20.41■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms