RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 RYBPQ8N488 228 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 CCDC63Q8NA47 563 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CLEC1AQ8NC01 280 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 NEK11Q8NG66 645 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 OR4C3Q8NH37 302 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 NCOA7Q8NI08 942 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CD101Q93033 1021 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ATP6V0A1Q93050 837 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 RFT1Q96AA3 541 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 SNRNP40Q96DI7 357 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 C5orf30Q96GV9 206 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ST6GAL2Q96JF0 529 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CDHR1Q96JP9 859 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 NEDD4LQ96PU5 975 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 RASL10BQ96S79 203 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MAP3K3Q99759 626 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ATG101Q9BSB4 218 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 LRRC1Q9BTT6 524 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 OR2B2Q9GZK3 357 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ZMYND12Q9H0C1 365 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CUEDC2Q9H467 287 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ACTL8Q9H568 366 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 C5orf66Q9H5L9 145 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 BICC1Q9H694 974 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 C6orf106Q9H6K1 298 aaPredicted RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 CD93Q9NPY3 652 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 MRPL17Q9NRX2 175 aaKnown RBP1.49□□□□□ -2.17
USP3-209ENST00000558925 ZFP57Q9NU63 452 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 TMEM161AQ9NX61 479 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 SPHK1Q9NYA1 384 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 CYP39A1Q9NYL5 469 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 DONSONQ9NYP3 566 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PKD2L2Q9NZM6 624 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 VPS18Q9P253 973 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 TRPC4Q9UBN4 977 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 FBXL5Q9UKA1 691 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 APPL1Q9UKG1 709 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ACAD8Q9UKU7 415 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 PPP2R2CQ9Y2T4 447 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 NSG2Q9Y328 171 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 TRIM17Q9Y577 477 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 NOTCH3Q9UM47 2321 aa1.49□□□□□ -2.17
USP3-209ENST00000558925 ARID2Q68CP9 1835 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 A0A087X0K7 114 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 TNFSF12-TNFSF13A0A0A6YY99 330 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 TRBV5-5A0A0J9YX44 114 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 C13orf42A0A1B0GVH6 325 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 A0A1W2PN81 502 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 A0A1W2PS18 150 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ILVBLA1L0T0 632 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 SYCE3A1L190 88 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 GTPBP10A4D1E9 387 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 MTMR11A4FU01 709 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 KRT87PA6NCN2 255 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ANTXRLA6NF34 631 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 SDR42E2A6NKP2 422 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ATP6V0E1O15342 81 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 HTATSF1O43719 755 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 KRT86O43790 486 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CRCPO75575 148 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PIGNO95427 931 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PNPP00491 289 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 APOHP02749 345 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 ATP1B1P05026 303 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 GPIP06744 558 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ABHD2P08910 425 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 NUDT17P0C025 328 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 IGHV4-31P0DP07 118 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 IGHV4-38-2P0DP08 117 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 PCP11498 1178 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 CETPP11597 493 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 FGF5P12034 268 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CD59P13987 128 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 LIFP15018 202 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 EZRP15311 586 aaKnown RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 STMN1P16949 149 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 GAP43P17677 238 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 UGT1A6P19224 532 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 EFNA1P20827 205 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 SP100P23497 879 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 GJB2P29033 226 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CSTF2P33240 577 aaKnown RBP eCLIP1.48□□□□□ -2.17
USP3-209ENST00000558925 CHRNA7P36544 502 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 IER3P46695 156 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 RABIFP47224 123 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 KCNJ4P48050 445 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 NT5C2P49902 561 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CASP9P55211 416 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 LINC01547P58512 204 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 BTG1P62324 171 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 GALK2Q01415 458 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 IL1RL1Q01638 556 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 CACNG1Q06432 222 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 SULT2A1Q06520 285 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 KLC1Q07866 573 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 IL10RBQ08334 325 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 ARL16Q0P5N6 197 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 GPR17Q13304 367 aa1.48□□□□□ -2.17
USP3-209ENST00000558925 DMP1Q13316 513 aaPredicted RBP1.48□□□□□ -2.17
USP3-209ENST00000558925 TRA2AQ13595 282 aaKnown RBP eCLIP1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 130.7 ms