RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 PPP2CAP67775 309 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 MAP7Q14244 749 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 UGT8Q16880 541 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 MTX3Q5HYI7 312 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 GLYATQ6IB77 296 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 PAPD5Q8NDF8 572 aaKnown RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 OR8J2Q8NGG1 315 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 MSANTD3Q96H12 275 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 CPPED1Q9BRF8 314 aaPredicted RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 FAM120CQ9NX05 1096 aaKnown RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 LIMD1Q9UGP4 676 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 USP22Q9UPT9 525 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 PCDHB14Q9Y5E9 798 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 H3BQ06 376 aaPredicted RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 ANXA4P09525 319 aaPredicted RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 CDH1P12830 882 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 GGT1P19440 569 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 KIAA1024LP59773 190 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 CTBSQ01459 385 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 CYP51A1Q16850 503 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 HMBOX1Q6NT76 420 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 C17orf64Q86WR6 236 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 FAM129CQ86XR2 697 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 ANKFN1Q8N957 763 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 TRPV3Q8NET8 790 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 N4BP2L2Q92802 583 aaPredicted RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 NSMCE2Q96MF7 247 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 INSM2Q96T92 566 aaPredicted RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 PRM3Q9NNZ6 103 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 ADGRE2Q9UHX3 823 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 ANAPC2Q9UJX6 822 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 SUFUQ9UMX1 484 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 WDR37Q9Y2I8 494 aa25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 CFAP20Q9Y6A4 193 aaKnown RBP25.36■■□□□ 1.65
CCDC88C-205ENST00000553403 H0YJX3 145 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 SLC31A1O15431 190 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 AKAP10O43572 662 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 TIPRLO75663 272 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 FCGR1AP12314 374 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 BMP2P12643 396 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 COX7A2P14406 83 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 RPL10P27635 214 aaKnown RBP25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 TFF2Q03403 129 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 BLMHQ13867 455 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 OR4F3Q6IEY1 312 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 TRIM69Q86WT6 500 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 OR2T12Q8NG77 320 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 GFM2Q969S9 779 aaKnown RBP25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 C12orf66Q96MD2 445 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 GBP5Q96PP8 586 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 FERD3LQ96RJ6 166 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 PIF1Q9H611 641 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 FZD3Q9NPG1 666 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 AURKCQ9UQB9 309 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 ATG2BQ96BY7 2078 aa25.35■■□□□ 1.65
CCDC88C-205ENST00000553403 SCAMP2O15127 329 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 GMNNO75496 209 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 IDSP22304 550 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 PTPN6P29350 595 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 HSPA13P48723 471 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 MRPS35P82673 323 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 DUOXA1Q1HG43 343 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 KIAA1324Q6UXG2 1013 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 DNAJC14Q6Y2X3 702 aaPredicted RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 CAMKMTQ7Z624 323 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 DTWD1Q8N5C7 304 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 RPLP0P6Q8NHW5 317 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 PPWD1Q96BP3 646 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 BIRC7Q96CA5 298 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 INPP5KQ9BT40 448 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 REXO4Q9GZR2 422 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 SPNS1Q9H2V7 528 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 OSGEPL1Q9H4B0 414 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 RPF2Q9H7B2 306 aaKnown RBP25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 GORASP2Q9H8Y8 452 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 WASH6PQ9NQA3 447 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 KCNK6Q9Y257 313 aa25.34■■□□□ 1.65
CCDC88C-205ENST00000553403 RFXANKO14593 260 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 ANXA6P08133 673 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 CXCR2P25025 360 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 POLE2P56282 527 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 WNT3P56703 355 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 GTDC1Q4AE62 458 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 TMIGD1Q6UXZ0 262 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 FAM124AQ86V42 546 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 CALHM3Q86XJ0 350 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 ZNF548Q8NEK5 533 aaPredicted RBP25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 OR7A2PQ8NGA2 310 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 OR10A6Q8NH74 314 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 EME1Q96AY2 570 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 CXorf40BQ96DE9 158 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 PITHD1Q9GZP4 211 aaPredicted RBP25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 KAT8Q9H7Z6 458 aaKnown RBP25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 MMP17Q9ULZ9 603 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 INVSQ9Y283 1065 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 GPSM3Q9Y4H4 160 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 DOCK9Q9BZ29 2069 aa25.33■■□□□ 1.65
CCDC88C-205ENST00000553403 FAM220BPB1ANY3 271 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 PCDH7O60245 1069 aa25.32■■□□□ 1.64
CCDC88C-205ENST00000553403 SCN2BO60939 215 aa25.32■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms