RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 PAX1P15863 534 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 PIK3R1P27986 724 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 ALDH4A1P30038 563 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 DUTP33316 252 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 SFTPDP35247 375 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 SNU13P55769 128 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 CDR2Q01850 454 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 IL10RBQ08334 325 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 AP1B1Q10567 949 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 ZRSR1Q15695 479 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 KBTBD12Q3ZCT8 623 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 SH2D5Q6ZV89 423 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 MARK2Q7KZI7 788 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 MEX3DQ86XN8 651 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 GPATCH11Q8N954 259 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 CABS1Q96KC9 395 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 NODALQ96S42 347 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 MRPL9Q9BYD2 267 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 ZNF350Q9GZX5 532 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 SDCBP2Q9H190 292 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 MMP28Q9H239 520 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 CPVLQ9H3G5 476 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 RNF121Q9H920 327 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 NOCTQ9UK39 431 aaKnown RBP3.71□□□□□ -1.82
VPS29-205ENST00000548539 GPR132Q9UNW8 380 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 KCNJ14Q9UNX9 436 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 NSG2Q9Y328 171 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 KLK4Q9Y5K2 254 aa3.71□□□□□ -1.82
VPS29-205ENST00000548539 IGHV4-61A0A0C4DH41 118 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 FAM172BPA6NC97 362 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 SNURFLB1AK76 121 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 SMIM1B2RUZ4 78 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 TMEM150CB9EJG8 249 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 H3BMM5 538 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 TRMUO75648 421 aaKnown RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 KRT36O76013 467 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 DFFBO76075 338 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 IGHV4-59P01825 116 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 CTNNB1P35222 781 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 FRKP42685 505 aaPredicted RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 MAGEB1P43366 347 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 OR3A1P47881 315 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 ADARP55265 1226 aaKnown RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 STX1BP61266 288 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 PHEXP78562 749 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 RBM39Q14498 530 aaKnown RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 OPCMLQ14982 345 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 MORF4L2Q15014 288 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 EXT1Q16394 746 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 GTDC1Q4AE62 458 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 UGT3A1Q6NUS8 523 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 FUT10Q6P4F1 479 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 CEACAM20Q6UY09 585 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 TRMT1LQ7Z2T5 733 aaKnown RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 SFRP1Q8N474 314 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 OR10V1Q8NGI7 309 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 SLC26A7Q8TE54 656 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 METTL21AQ8WXB1 218 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 CENPTQ96BT3 561 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 AP2M1Q96CW1 435 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 RBM41Q96IZ5 413 aaKnown RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 C4orf45Q96LM5 186 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 CCDC43Q96MW1 224 aaKnown RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 ZNF559Q9BR84 538 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 ATG101Q9BSB4 218 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 SLC52A3Q9NQ40 469 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 SLCO1C1Q9NYB5 712 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 FLRT3Q9NZU0 649 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 KCNG2Q9UJ96 466 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 LEF1Q9UJU2 399 aaPredicted RBP3.7□□□□□ -1.82
VPS29-205ENST00000548539 STK36Q9NRP7 1315 aa3.7□□□□□ -1.82
VPS29-205ENST00000548539 A0A0U1RQG5 324 aaPredicted RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 ILVBLA1L0T0 632 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 SDR42E2A6NKP2 422 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 H0YIG0 161 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 EPHB6O15197 1021 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 GLCEO94923 617 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 IGLV2-11P01706 119 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ATP1B1P05026 303 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 GPIP06744 558 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 SBK2P0C263 348 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 C8orf89P0DMQ9 161 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 GOT1P17174 413 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 CYP2A7P20853 494 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ITGA3P26006 1051 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 MAP2K2P36507 400 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 CETN2P41208 172 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 DNA2P51530 1060 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ACTN3Q08043 901 aaPredicted RBP3.69□□□□□ -1.82
VPS29-205ENST00000548539 KIAA1644Q3SXP7 199 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ZNF542PQ5EBM4 170 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.69□□□□□ -1.82
VPS29-205ENST00000548539 LCN1P1Q5VSP4 162 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 SLC35E4Q6ICL7 350 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 OR4C11Q6IEV9 310 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 TMEM207Q6UWW9 146 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 ANKRD46Q86W74 232 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 KIRREL3Q8IZU9 778 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 OR7A2PQ8NGA2 310 aa3.69□□□□□ -1.82
VPS29-205ENST00000548539 OR4C15Q8NGM1 316 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms