RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HIST2H2ACQ16777 129 aaPredicted RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 PAGE2BQ5JRK9 111 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 PRAMEF9Q5VWM5 478 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 LIPJQ5W064 366 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 HIST2H2AA3Q6FI13 130 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 MCATQ8IVS2 390 aaKnown RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 KRT78Q8N1N4 520 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 MGARPQ8TDB4 240 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 THAP11Q96EK4 314 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 CNDP1Q96KN2 507 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 CNTNAP3BQ96NU0 1288 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 OR6C1Q96RD1 312 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 GATA5Q9BWX5 397 aaPredicted RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 CNTNAP3Q9BZ76 1288 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 GSTO2Q9H4Y5 243 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 GEMIN8Q9NWZ8 242 aaKnown RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 SATB2Q9UPW6 733 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 STK38LQ9Y2H1 464 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 A0A1W2PNU3 283 aaPredicted RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 TRBC2A0A5B9 178 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 FEZF1A0PJY2 475 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 WDR91A4D1P6 747 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 CLDN9O95484 217 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 HGFP14210 728 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 TSPAN8P19075 237 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 ARL1P40616 181 aaPredicted RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 HNF4AP41235 474 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 REEP5Q00765 189 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 LCP2Q13094 533 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 SLBPQ14493 270 aaKnown RBP eCLIP16.4■□□□□ 0.22
LIG1-204ENST00000542460 GPR19Q15760 415 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 DEFB110Q30KQ9 67 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 C3orf38Q5JPI3 329 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 FOXR1Q6PIV2 292 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 FRMD7Q6ZUT3 714 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 MILR1Q7Z6M3 343 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 PLD3Q8IV08 490 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 L3MBTL4Q8NA19 623 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 ZNF740Q8NDX6 193 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 OR52B6Q8NGF0 335 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 OR8K5Q8NH50 307 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 ZNF501Q96CX3 271 aaPredicted RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 MAGEB10Q96LZ2 347 aaPredicted RBP16.4■□□□□ 0.22
LIG1-204ENST00000542460 FCRL4Q96PJ5 515 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 OR2A5Q96R48 311 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 SPNS1Q9H2V7 528 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 NT5DC2Q9H857 520 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 POLR1BQ9H9Y6 1135 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 SLC39A1Q9NY26 324 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 SERTAD3Q9UJW9 196 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 WASF3Q9UPY6 502 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 PCDHGA8Q9Y5G5 932 aa16.4■□□□□ 0.22
LIG1-204ENST00000542460 TMEM150CB9EJG8 249 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 PPP6CO00743 305 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 POLR1CO15160 346 aaPredicted RBP16.39■□□□□ 0.21
LIG1-204ENST00000542460 HCRTR1O43613 425 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 OR1F1O43749 312 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 LCMT2O60294 686 aaKnown RBP16.39■□□□□ 0.21
LIG1-204ENST00000542460 ITIH1P19827 911 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 CD22P20273 847 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 RAB15P59190 212 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 TRAF3Q13114 568 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 GRHL2Q6ISB3 625 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 TMIGD1Q6UXZ0 262 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 MYLK4Q86YV6 388 aaPredicted RBP16.39■□□□□ 0.21
LIG1-204ENST00000542460 OR6Y1Q8NGX8 325 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 PPP1R14CQ8TAE6 165 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 MDM1Q8TC05 714 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 UBE2E3Q969T4 207 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 ZNF382Q96SR6 550 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 TRMOQ9BU70 441 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 SCNM1Q9BWG6 230 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 NRSN2Q9GZP1 204 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 DRC3Q9H069 523 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 PISDQ9UG56 409 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 KLK13Q9UKR3 277 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 RARRES3Q9UL19 164 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 PCDHGA4Q9Y5G9 962 aa16.39■□□□□ 0.21
LIG1-204ENST00000542460 PCM1Q15154 2024 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 LOC105369274A0A096LPK9 316 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 LOC102723532A0A0G2JNH3 316 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 H3BQF6 201 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 NPHS1O60500 1241 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 FGF5P12034 268 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 NEFHP12036 1026 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 NR1D1P20393 614 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 SERPINB5P36952 375 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 BCL6P41182 706 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 SCTRP47872 440 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 MAPK10P53779 464 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 PKNOX1P55347 436 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 CYP4F3Q08477 520 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 CAMK2BQ13554 666 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 RBBP5Q15291 538 aaKnown RBP16.38■□□□□ 0.21
LIG1-204ENST00000542460 TCTE1Q5JU00 501 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 FRMPD2BQ6IN97 320 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 ZCCHC23Q6ZST2 131 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 PPP1R3BQ86XI6 285 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 GPR135Q8IZ08 494 aa16.38■□□□□ 0.21
LIG1-204ENST00000542460 OR4N4Q8N0Y3 316 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms