RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-222ENST00000541204 YIPF6Q96EC8 236 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 REXO5Q96IC2 774 aaKnown RBP12.13□□□□□ -0.47
RNF4-222ENST00000541204 EGLN2Q96KS0 407 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 LYSMD1Q96S90 227 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 ATG10Q9H0Y0 220 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 ATAD3AQ9NVI7 634 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 KCTD5Q9NXV2 234 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 AP3M1Q9Y2T2 418 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 GMPPBQ9Y5P6 360 aa12.13□□□□□ -0.47
RNF4-222ENST00000541204 KIAA0355O15063 1070 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 CLDN9O95484 217 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 POLR2EP19388 210 aaKnown RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 ACVR2AP27037 513 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 EPHA2P29317 976 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 MAGEA2P43356 314 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 CLDN8P56748 225 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 CLCA4Q14CN2 919 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 DGUOKQ16854 277 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 ZXDCQ2QGD7 858 aaPredicted RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 CAPN13Q6MZZ7 669 aaPredicted RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 ADCK1Q86TW2 530 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 SELENOMQ8WWX9 145 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 S100ZQ8WXG8 99 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 DUSP21Q9H596 190 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 NECTIN3Q9NQS3 549 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 TPRKBQ9Y3C4 175 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 NUP214P35658 2090 aaPredicted RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 MT-ND2P03891 347 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 ANXA5P08758 320 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 OR56A5P0C7T3 313 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 MYOGP15173 224 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 HOXB9P17482 250 aaPredicted RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 JUNDP17535 347 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 IL1RNP18510 177 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 EPORP19235 508 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 RPS3AP61247 264 aaKnown RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 ABHD18Q0P651 414 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 ARHGAP15Q53QZ3 475 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 TCEAL5Q5H9L2 206 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 OR2T5Q6IEZ7 315 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 CADM3Q8N126 398 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 MFSD4AQ8N468 514 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 RNF175Q8N4F7 328 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 OR2T29Q8NH02 315 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 RPL3LQ92901 407 aaKnown RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 UBE2FQ969M7 185 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 ZNF641Q96N77 438 aaPredicted RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 MCCC1Q96RQ3 725 aaPredicted RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 RMND5AQ9H871 391 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 RASSF1Q9NS23 344 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 SCN3BQ9NY72 215 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 SAMD4AQ9UPU9 718 aaKnown RBP12.12□□□□□ -0.47
RNF4-222ENST00000541204 ERVW-1Q9UQF0 538 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 ITM2BQ9Y287 266 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 MAN2B2Q9Y2E5 1009 aa12.12□□□□□ -0.47
RNF4-222ENST00000541204 SZT2Q5T011 3432 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 TMEM202A6NGA9 273 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 RFXANKO14593 260 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 WNT9AO14904 365 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 CCNDBP1O95273 360 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 KRT6AP02538 564 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 KRT6BP04259 564 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 KRT6CP48668 564 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 ARHGDIAP52565 204 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 KDM4DQ6B0I6 523 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 OR4F3Q6IEY1 312 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 RNF165Q6ZSG1 346 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 VTCN1Q7Z7D3 282 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 TTC29Q8NA56 475 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 DYNC2LI1Q8TCX1 351 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 UBTD2Q8WUN7 234 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 CLP1Q92989 425 aaKnown RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 ZNF300Q96RE9 604 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 RIOK2Q9BVS4 552 aaKnown RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 IL1RAPQ9NPH3 570 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 PDP1Q9P0J1 537 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 PNMA8BQ9ULN7 279 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 LTBP2Q14767 1821 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 CTSLP07711 333 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 ATP1B2P14415 290 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 SDC1P18827 310 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 XPAP23025 273 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 HTRA4P83105 476 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 MESP2Q0VG99 397 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 KEAP1Q14145 624 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 SYT6Q5T7P8 510 aaPredicted RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 ZCCHC8Q6NZY4 707 aaKnown RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 DNAJB8Q8NHS0 232 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 ELMO1Q92556 727 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 ITPKCQ96DU7 683 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 ZFYVE19Q96K21 471 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 LRRC3BQ96PB8 259 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 CPEB1Q9BZB8 566 aaKnown RBP12.11□□□□□ -0.47
RNF4-222ENST00000541204 ASPSCR1Q9BZE9 553 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 GABARAPL1Q9H0R8 117 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 FAM83DQ9H4H8 585 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 POLE4Q9NR33 117 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 AASDHPPTQ9NRN7 309 aa12.11□□□□□ -0.47
RNF4-222ENST00000541204 AGAP14A8MT82 685 aa12.1□□□□□ -0.47
RNF4-222ENST00000541204 UPK3BL1B0FP48 263 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms