RNA–Protein interactions for RNA: ENST00000538456.3

SMARCA4-206, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 3

Gene SMARCA4, Length 738 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-206ENST00000538456 PLD3Q8IV08 490 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 ARHGEF39Q8N4T4 335 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 OTUD6BQ8N6M0 293 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 MDS2Q8NDY4 140 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 OR9A4Q8NGU2 314 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 SMPDL3AQ92484 453 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 ZNF354BQ96LW1 612 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 OR2A5Q96R48 311 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 SPOCK3Q9BQ16 436 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 UTP23Q9BRU9 249 aaKnown RBP13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 KCNK13Q9HB14 408 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 MCCC2Q9HCC0 563 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 CHRAC1Q9NRG0 131 aa13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 PACSIN2Q9UNF0 486 aaPredicted RBP13.24□□□□□ -0.29
SMARCA4-206ENST00000538456 GRID2IPA4D2P6 1211 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 ARHGEF33A8MVX0 844 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 MAN1A2O60476 641 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 NDUFS3O75489 264 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 SUN1O94901 812 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 EZRP15311 586 aaKnown RBP13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CYLC1P35663 651 aaPredicted RBP13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CD96P40200 585 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 AVPR1BP47901 424 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CSNK1G2P78368 415 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CRADDP78560 199 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 OC90Q02509 493 aaPredicted RBP13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 KLF1Q13351 362 aaPredicted RBP13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 ANKRD20A4Q4UJ75 823 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CTSL3PQ5NE16 218 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 ICE2Q659A1 982 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 PLAG1Q6DJT9 500 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 PRSS41Q7RTY9 318 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 PRUNE1Q86TP1 453 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CRLF3Q8IUI8 442 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CCDC170Q8IYT3 715 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 PPFIBP2Q8ND30 876 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 OR9A1PQ8NGU1 263 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CA5BP1Q8WTZ4 195 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 FRMD6Q96NE9 622 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 CYTH2Q99418 400 aa13.23□□□□□ -0.29
SMARCA4-206ENST00000538456 INTS1Q8N201 2190 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 ASPDHA6ND91 283 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 HAT1O14929 419 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 NIPSNAP2O75323 286 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 MATN4O95460 622 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 APRTP07741 180 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 ERGP11308 486 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 PKMP14618 531 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 CD46P15529 392 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 FDFT1P37268 417 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 ZNF425Q6IV72 752 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 GALNTL5Q7Z4T8 443 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 LRRC6Q86X45 466 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 LRRC57Q8N9N7 239 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 TMEM178AQ8NBL3 297 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 RNF214Q8ND24 703 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 SDCCAG3Q96C92 435 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 SCMH1Q96GD3 660 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 NPAS2Q99743 824 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 TRIM51Q9BSJ1 452 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 RAB6BQ9NRW1 208 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 UTP6Q9NYH9 597 aaKnown RBP13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 HCN3Q9P1Z3 774 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 C19orf25Q9UFG5 118 aaPredicted RBP13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 PPT2Q9UMR5 302 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 PCDHGB6Q9Y5F9 930 aa13.22□□□□□ -0.29
SMARCA4-206ENST00000538456 SOWAHDA6NJG2 315 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 GABRR3A8MPY1 467 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 MYO1CO00159 1063 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 TXNDC9O14530 226 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 FANCGO15287 622 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 ASNA1O43681 348 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 CCNDBP1O95273 360 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 RPS3P23396 243 aaKnown RBP eCLIP13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 FMO4P31512 558 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 XCR1P46094 333 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 PNLIPRP1P54315 467 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 SESN2P58004 480 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 PRDX1Q06830 199 aaKnown RBP13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 FAM53BQ14153 422 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 NDUFA9Q16795 377 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 MEP1AQ16819 746 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 KRTAP21-3Q3LHN1 58 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 H3F3CQ6NXT2 135 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 PEX26Q7Z412 305 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 ANKRD37Q7Z713 158 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 DOLPP1Q86YN1 238 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 SIAH3Q8IW03 269 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 GHDCQ8N2G8 530 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 UBL4BQ8N7F7 174 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 FAM98AQ8NCA5 519 aaKnown RBP13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 PEX13Q92968 403 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 POM121Q96HA1 1249 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 CALR3Q96L12 384 aaKnown RBP13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 BIRC8Q96P09 236 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 PKP4Q99569 1192 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 MACROD1Q9BQ69 325 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 RBCK1Q9BYM8 510 aa13.21□□□□□ -0.29
SMARCA4-206ENST00000538456 LACRTQ9GZZ8 138 aa13.21□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms