RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 UCKL1Q9NWZ5 548 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 OR6C2Q9NZP2 312 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 SPATA7Q9P0W8 599 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 STOX2Q9P2F5 926 aaPredicted RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 REV1Q9UBZ9 1251 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 ANGPTL2Q9UKU9 493 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 TDRKHQ9Y2W6 561 aaKnown RBP7.15□□□□□ -1.26
CD44-228ENST00000528455 PCDHB14Q9Y5E9 798 aa7.15□□□□□ -1.26
CD44-228ENST00000528455 WDR91A4D1P6 747 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 NCF1BA6NI72 391 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 SRRM3A6NNA2 597 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 NCF1CA8MVU1 366 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 TMEM114B3SHH9 223 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 K7EPI3 171 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 ACACBO00763 2458 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PPM1DO15297 605 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 POLR3GO15318 223 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 GSC2O15499 205 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PRICKLE3O43900 615 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 KATNA1O75449 491 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SUPT7LO94864 414 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 FKBP9O95302 570 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 MLYCDO95822 493 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 F13BP05160 661 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 FGF3P11487 239 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 NCF1P14598 390 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 NPPBP16860 134 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 HRH2P25021 359 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 IMPA1P29218 277 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 EEF1DP29692 281 aaKnown RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 SHMT2P34897 504 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CASP2P42575 452 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SLC6A12P48065 614 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SLC1A6P48664 564 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PIK3CGP48736 1102 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CCT8P50990 548 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 RAB28P51157 221 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 GUCY1A3Q02108 690 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 HHEXQ03014 270 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CLCQ05315 142 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SQSTM1Q13501 440 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 NAE1Q13564 534 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CHI3L2Q15782 390 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 DEFB133Q30KQ1 61 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PTCHD3Q3KNS1 767 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 C14orf28Q4W4Y0 310 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 UNC50Q53HI1 259 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 EEF1AKMT2Q5JPI9 291 aaKnown RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 CAPN13Q6MZZ7 669 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 KLHL35Q6PF15 583 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 TMEM26Q6ZUK4 368 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PIP4P1Q86T03 277 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 TAX1BP1Q86VP1 789 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 MCATQ8IVS2 390 aaKnown RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 SYTL1Q8IYJ3 562 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 KIRREL3Q8IZU9 778 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CHCHD4Q8N4Q1 142 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 DEFB124Q8NES8 71 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 OR4E2Q8NGC2 313 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 OR52E1Q8NGJ3 308 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 OR2L8Q8NGY9 312 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PPP1R14CQ8TAE6 165 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 MGARPQ8TDB4 240 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 LRRC8CQ8TDW0 803 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SLC37A2Q8TED4 501 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 PPP4R1Q8TF05 950 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 UBTD2Q8WUN7 234 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 LCN9Q8WX39 176 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SMPDL3AQ92484 453 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 MAGEB10Q96LZ2 347 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 HAUS8Q9BT25 410 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 HGH1Q9BTY7 390 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 MECRQ9BV79 373 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 NTMT1Q9BV86 223 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SGPP1Q9BX95 441 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 RAB33BQ9H082 229 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 ILKAPQ9H0C8 392 aaPredicted RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 EPB41L1Q9H4G0 881 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 MLXIPLQ9NP71 852 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 LRIT1Q9P2V4 623 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 OPTCQ9UBM4 332 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 SLC22A14Q9Y267 594 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 ENTPD2Q9Y5L3 495 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CFAP20Q9Y6A4 193 aaKnown RBP7.14□□□□□ -1.27
CD44-228ENST00000528455 KCNE2Q9Y6J6 123 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 CHD8Q9HCK8 2581 aa7.14□□□□□ -1.27
CD44-228ENST00000528455 EME2A4GXA9 379 aaPredicted RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 GMNCA6NCL1 334 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 MATN2O00339 956 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 E2F3O00716 465 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 SDC3O75056 442 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 SNNO75324 88 aaPredicted RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 SIX3O95343 332 aaPredicted RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 RPS17P08708 135 aaKnown RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 GNAZP19086 355 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GDF5P43026 501 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 HSPA7P48741 367 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 DUSP3P51452 185 aaPredicted RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 HK2P52789 917 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 PKNOX1P55347 436 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms