RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SYT12Q8IV01 421 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 KIF2BQ8N4N8 673 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 OR10G6Q8NH81 332 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 DPH7Q9BTV6 452 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 SLC25A23Q9BV35 468 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 RHBGQ9H310 441 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 SLC6A20Q9NP91 592 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 DMRT3Q9NQL9 472 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 UCKL1Q9NWZ5 548 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 TAS2R1Q9NYW7 299 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 CSNK1G3Q9Y6M4 447 aa20.2■□□□□ 0.82
VPS28-208ENST00000527797 NOBOXO60393 691 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 ACPPP15309 386 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 PCSK2P16519 638 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 FASLGP48023 281 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 STX5Q13190 355 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 BIRC2Q13490 618 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 CUL3Q13618 768 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 ZNF423Q2M1K9 1284 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 CHCHD2P9Q5T1J5 151 aaPredicted RBP20.19■□□□□ 0.82
VPS28-208ENST00000527797 OGFOD3Q6PK18 319 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 FAM20CQ8IXL6 584 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 TBC1D19Q8N5T2 526 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 APOLD1Q96LR9 279 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 OR2A14Q96R47 310 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 SERPINI1Q99574 410 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 ELF4Q99607 663 aaPredicted RBP20.19■□□□□ 0.82
VPS28-208ENST00000527797 C1orf21Q9H246 121 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 ACTR10Q9NZ32 417 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 FANCMQ8IYD8 2048 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 THADAQ6YHU6 1953 aa20.19■□□□□ 0.82
VPS28-208ENST00000527797 TRBC2A0A5B9 178 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 FEZF1A0PJY2 475 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 GSAPA4D1B5 854 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 CFAP73A6NFT4 308 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 C2orf74A8MZ97 194 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 OR1F1O43749 312 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 SP9P0CG40 484 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 PRPS2P11908 318 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 RXRGP48443 463 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 UFM1P61960 85 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 BNC1Q01954 994 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 ACSM2AQ08AH3 577 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 KIAA1614Q5VZ46 1190 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 ACSM2BQ68CK6 577 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 FUNDC1Q8IVP5 155 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP20.18■□□□□ 0.826e-7■■■■■ 139.2
VPS28-208ENST00000527797 LIX1Q8N485 282 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 RBM15BQ8NDT2 890 aaKnown RBP20.18■□□□□ 0.82
VPS28-208ENST00000527797 LDHAL6BQ9BYZ2 381 aaPredicted RBP20.18■□□□□ 0.82
VPS28-208ENST00000527797 HRASLS2Q9NWW9 162 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 PPT2Q9UMR5 302 aa20.18■□□□□ 0.82
VPS28-208ENST00000527797 MYO1DO94832 1006 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 ETHE1O95571 254 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 TGFB1P01137 390 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 BCKDHAP12694 445 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 UGT2B7P16662 529 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 PTX3P26022 381 aaPredicted RBP20.17■□□□□ 0.82
VPS28-208ENST00000527797 DPP6P42658 865 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 PEAR1Q5VY43 1037 aaPredicted RBP20.17■□□□□ 0.82
VPS28-208ENST00000527797 OOSP2Q86WS3 158 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 C17orf82Q86X59 251 aaPredicted RBP20.17■□□□□ 0.82
VPS28-208ENST00000527797 FAM9CQ8IZT9 166 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 ANKRD53Q8N9V6 530 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 TTLQ8NG68 377 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 FLVCR1-AS1Q8TAF5 88 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 CHTF18Q8WVB6 975 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 UCK1Q9HA47 277 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 EFCAB1Q9HAE3 211 aa20.17■□□□□ 0.82
VPS28-208ENST00000527797 RUVBL1Q9Y265 456 aaKnown RBP20.17■□□□□ 0.82
VPS28-208ENST00000527797 NR5A2O00482 541 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 AIM2O14862 343 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 PPM1DO15297 605 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 SH3BGRLO75368 114 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 FKBP9O95302 570 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 KCNK10P57789 538 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 BNIP3Q12983 259 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 SIM2Q14190 667 aaPredicted RBP20.16■□□□□ 0.82
VPS28-208ENST00000527797 MMEL1Q495T6 779 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 DNAL1Q4LDG9 190 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 SPIN4Q56A73 249 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 ZNF425Q6IV72 752 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 ARMC6Q6NXE6 501 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 NOXRED1Q6NXP6 359 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 BLOC1S3Q6QNY0 202 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 VN1R5Q7Z5H4 357 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 RABEPKQ7Z6M1 372 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 ZNF761Q86XN6 746 aaPredicted RBP20.16■□□□□ 0.82
VPS28-208ENST00000527797 FBXO27Q8NI29 283 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 PROKR1Q8TCW9 393 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 TSPEARQ8WU66 669 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 RCN3Q96D15 328 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 FCRL1Q96LA6 429 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 TBC1D10AQ9BXI6 508 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 MRPL1Q9BYD6 325 aaKnown RBP20.16■□□□□ 0.82
VPS28-208ENST00000527797 OR51B5Q9H339 312 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 GON4LQ3T8J9 2241 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 FAM234BA2RU67 622 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 OR5K3A6NET4 321 aa20.16■□□□□ 0.82
VPS28-208ENST00000527797 ANKRD28O15084 1053 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms