RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 METTL2AQ96IZ6 378 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 VCPIP1Q96JH7 1222 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 C8orf76Q96K31 380 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ARL5BQ96KC2 179 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 C7orf34Q96L11 122 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ART5Q96L15 291 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP6V1G3Q96LB4 118 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SENP8Q96LD8 212 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TCEANC2Q96MN5 208 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF48Q96MX3 618 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF396Q96N95 335 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPATA13Q96N96 652 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SFXN2Q96NB2 322 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TTC25Q96NG3 672 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NECTIN4Q96NY8 510 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MUS81Q96NY9 551 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 QRFPRQ96P65 431 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 INPP4AQ96PE3 977 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MS4A10Q96PG2 267 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PSKH2Q96QS6 385 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FRG2BQ96QU4 278 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PANX3Q96QZ0 392 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 OR1F2PQ96R84 312 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BBS4Q96RK4 519 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIGLEC11Q96RL6 698 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 USP28Q96RU2 1077 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIN3AQ96ST3 1273 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SECISBP2Q96T21 854 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FEVQ99581 238 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CHP1Q99653 195 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASCL2Q99929 193 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPAG8Q99932 426 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 DDX50Q9BQ39 737 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM110AQ9BQ89 295 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BCL7BQ9BQE9 202 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LZTS2Q9BRK4 669 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RIOK1Q9BRS2 568 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SIKE1Q9BRV8 207 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATG101Q9BSB4 218 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF577Q9BSK1 485 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZSCAN5AQ9BUG6 496 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABHD14AQ9BUJ0 271 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 EFHD1Q9BUP0 239 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFT27Q9BW83 186 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SCNM1Q9BWG6 230 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF416Q9BWM5 594 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GTPBP2Q9BX10 602 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 C1QTNF5Q9BXJ0 243 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IDI2Q9BXS1 227 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MOV10L1Q9BXT6 1211 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FTHL17Q9BXU8 183 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HDHD5Q9BXW7 423 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 CAPS2Q9BXY5 557 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BARHL1Q9BZE3 327 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR61Q9BZJ8 451 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AMBRA1Q9C0C7 1298 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM192AQ9GZU8 254 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 WWTR1Q9GZV5 400 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 NACA2Q9H009 215 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 IQCGQ9H095 443 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM117Q9H0C3 514 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TRPV6Q9H1D0 765 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 P2RY12Q9H244 342 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIL3Q9H2H8 161 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMOC2Q9H3U7 446 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZDHHC6Q9H6R6 413 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 EXO5Q9H790 373 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TDRD3Q9H7E2 651 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 C8orf33Q9H7E9 229 aaPredicted RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 YY1AP1Q9H869 796 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 WDR76Q9H967 626 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FKRPQ9H9S5 495 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FN3KRPQ9HA64 309 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 SAP30LQ9HAJ7 183 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LMAN1LQ9HAT1 526 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 UPF2Q9HAU5 1272 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNK13Q9HB14 408 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PARVGQ9HBI0 331 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 VAT1LQ9HCJ6 419 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 Q9N2J8 555 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TXNRD2Q9NNW7 524 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 BPIFA1Q9NP55 256 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KCNMB3Q9NPA1 279 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 LZTFL1Q9NQ48 299 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDGFCQ9NRA1 345 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 GPR173Q9NS66 373 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNPLA3Q9NST1 481 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 RNF146Q9NTX7 359 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABHD10Q9NUJ1 306 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 AGPAT5Q9NUQ2 364 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PANK4Q9NVE7 773 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ETNK2Q9NVF9 386 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 MRPS18AQ9NVS2 196 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM45AQ9NWC5 275 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMEM248Q9NWD8 314 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASNSD1Q9NWL6 643 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 PAG1Q9NWQ8 432 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 FAM120CQ9NX05 1096 aaKnown RBP0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 HYPKQ9NX55 129 aa0.56□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL28Q9NXS3 571 aa0.56□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms