RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 ACTR8Q9H981 624 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 SYNPO2LQ9H987 977 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 GEMIN8Q9NWZ8 242 aaKnown RBP28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 SLC39A1Q9NY26 324 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 NKIRAS1Q9NYS0 192 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 PLCL2Q9UPR0 1127 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 PCDHGA8Q9Y5G5 932 aa28.37■■■□□ 2.13
LIMCH1-211ENST00000509638 OR7A17O14581 309 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 BPGMP07738 259 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 DHRS4L1P0CG22 281 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 CD22P20273 847 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 CCNG1P51959 295 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 SLC18A1P54219 525 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 RPS15AP62244 130 aaKnown RBP28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 RELAQ04206 551 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 CYB5D1Q6P9G0 228 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 MCATQ8IVS2 390 aaKnown RBP28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 WDR34Q96EX3 536 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 NEUROG3Q9Y4Z2 214 aa28.36■■■□□ 2.13
LIMCH1-211ENST00000509638 TRIM13O60858 407 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 BCL6P41182 706 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 RAB15P59190 212 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 CLCQ05315 142 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 TBCCQ15814 346 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 CFAP157Q5JU67 520 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 FBXO42Q6P3S6 717 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 MYLK4Q86YV6 388 aaPredicted RBP28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 TRPC4APQ8TEL6 797 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 ATP6V1E2Q96A05 226 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 PRR11Q96HE9 360 aaPredicted RBP28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 EFCAB11Q9BUY7 163 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 FBXO8Q9NRD0 319 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 RARRES3Q9UL19 164 aa28.35■■■□□ 2.13
LIMCH1-211ENST00000509638 TRBC2A0A5B9 178 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 POLR1CO15160 346 aaPredicted RBP28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 CTSBP07858 339 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 ASPHQ12797 758 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 TRAF3Q13114 568 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 IL11RAQ14626 422 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 FRMD7Q6ZUT3 714 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 OR1L3Q8NH93 324 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 SREK1Q8WXA9 508 aaKnown RBP28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 CDK15Q96Q40 435 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 OR2A5Q96R48 311 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 PAIP2Q9BPZ3 127 aaKnown RBP28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 IRAK4Q9NWZ3 460 aa28.34■■■□□ 2.13
LIMCH1-211ENST00000509638 FRYQ5TBA9 3013 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 LOC105369274A0A096LPK9 316 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 LOC102723532A0A0G2JNH3 316 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 WDR91A4D1P6 747 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 PPP6CO00743 305 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 WFS1O76024 890 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 VSX2P58304 361 aaPredicted RBP28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 PCDH1Q08174 1060 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 LCP2Q13094 533 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 E2F2Q14209 437 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 HHATQ5VTY9 493 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 ZCCHC23Q6ZST2 131 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 OR4N4Q8N0Y3 316 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 TBC1D19Q8N5T2 526 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 GATA5Q9BWX5 397 aaPredicted RBP28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 NRSN2Q9GZP1 204 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 PCDHGA4Q9Y5G9 962 aa28.33■■■□□ 2.13
LIMCH1-211ENST00000509638 OR1F1O43749 312 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 TNFSF15O95150 251 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 OTCP00480 354 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 CXCR2P25025 360 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 CASP2P42575 452 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 ITGA1P56199 1179 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 WDR4P57081 412 aaKnown RBP28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 HSP90B2PQ58FF3 399 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 PAGE2BQ5JRK9 111 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 PPP1R3BQ86XI6 285 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 NUDCD3Q8IVD9 361 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 KRT78Q8N1N4 520 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 RERGQ96A58 199 aaPredicted RBP28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 NXPE2Q96DL1 559 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 SARGQ9BW04 601 aa28.33■■■□□ 2.12
LIMCH1-211ENST00000509638 A0A1B0GTL3 188 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 H0YGG7 62 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 BIRC5O15392 142 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 LCMT2O60294 686 aaKnown RBP28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 UGDHO60701 494 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 H2AFYO75367 372 aaKnown RBP28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 OR2B3O76000 313 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 MLYCDO95822 493 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 FGF5P12034 268 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 ARF3P61204 181 aaPredicted RBP28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 DCAF12Q5T6F0 453 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 GRHL2Q6ISB3 625 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 TMIGD1Q6UXZ0 262 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 OR8K5Q8NH50 307 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 TAAR9Q96RI9 348 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 ZNF382Q96SR6 550 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 NTMT1Q9BV86 223 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 DDA1Q9BW61 102 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 MSRB2Q9Y3D2 182 aa28.32■■■□□ 2.12
LIMCH1-211ENST00000509638 CLDN9O95484 217 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 STATHP02808 62 aa28.31■■■□□ 2.12
LIMCH1-211ENST00000509638 EIF2S1P05198 315 aaKnown RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms