RNA–Protein interactions for RNA: ENST00000507004.1

HMGCS1-203, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 2

Gene HMGCS1, Length 950 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-203ENST00000507004 MORF4L2Q15014 288 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 PRR30Q53SZ7 412 aaPredicted RBP13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 SHISA6Q6ZSJ9 500 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 CUZD1Q86UP6 607 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 C17orf64Q86WR6 236 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 TBC1D19Q8N5T2 526 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 GPATCH11Q8N954 259 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 ST6GALNAC3Q8NDV1 305 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 PRR7Q8TB68 274 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 METTL21AQ8WXB1 218 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 ATL1Q8WXF7 558 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 SLC30A3Q99726 388 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 TRIM56Q9BRZ2 755 aaKnown RBP13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 NOVA2Q9UNW9 492 aaKnown RBP13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 SLC5A6Q9Y289 635 aa13.71□□□□□ -0.21
HMGCS1-203ENST00000507004 DOCK10Q96BY6 2186 aa13.71□□□□□ -0.22
HMGCS1-203ENST00000507004 SPTAN1Q13813 2472 aaKnown RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 LOC102723996A0A087X1L8 192 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 KRT87PA6NCN2 255 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 H7BY64 318 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 WFS1O76024 890 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 NSA2O95478 260 aaKnown RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 ENO2P09104 434 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 FOXL2P58012 376 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 TBPL1P62380 186 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 MPP1Q00013 466 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 NR6A1Q15406 480 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 HKDC1Q2TB90 917 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 EIF2S3LQ2VIR3 472 aaKnown RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 VWA2Q5GFL6 755 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 CAPN13Q6MZZ7 669 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 LCTLQ6UWM7 567 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 PIWIL4Q7Z3Z4 852 aaKnown RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 PPFIBP2Q8ND30 876 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 CERS2Q96G23 380 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 C5orf34Q96MH7 638 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 PRAP1Q96NZ9 151 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 TUBB6Q9BUF5 446 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 ZNF160Q9HCG1 818 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 STOX2Q9P2F5 926 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 PLEKHB1Q9UF11 243 aaPredicted RBP13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 TEKT2Q9UIF3 430 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 FLNCQ14315 2725 aa13.7□□□□□ -0.22
HMGCS1-203ENST00000507004 ICE1Q9Y2F5 2266 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 USP9YO00507 2555 aaPredicted RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 MDC1Q14676 2089 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 TRAV17A0A0B4J275 112 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 HAT1O14929 419 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 FOXS1O43638 330 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 NRP2O60462 931 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 MED26O95402 600 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 UQCRHP07919 91 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 SLC35G6P0C7Q6 338 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 COX6A1P12074 109 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 EDN3P14138 238 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 AGTR2P50052 363 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 PER3P56645 1201 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 IL2P60568 153 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 YBX1P67809 324 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 ARG2P78540 354 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 DHX9Q08211 1270 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 CDC16Q13042 620 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 MRPL49Q13405 166 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 PDAP1Q13442 181 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 FRG1Q14331 258 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 FAM45BPQ6NSW5 357 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 AGTRAPQ6RW13 159 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 TMEM205Q6UW68 189 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 FAM180AQ6UWF9 173 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 PRSS58Q8IYP2 241 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 ARHGEF39Q8N4T4 335 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 AMER3Q8N944 861 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 FAM45AQ8TCE6 357 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 ANP32BQ92688 251 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 HAS2Q92819 552 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 C19orf60Q96EN9 201 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 RNF32Q9H0A6 362 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 ANKHQ9HCJ1 492 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 RNF14Q9UBS8 474 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 PDE10AQ9Y233 779 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 MRPS2Q9Y399 296 aaKnown RBP13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 MAST4O15021 2626 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 POLEQ07864 2286 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 HIVEP3Q5T1R4 2406 aa13.69□□□□□ -0.22
HMGCS1-203ENST00000507004 USP9XQ93008 2570 aaPredicted RBP13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 IGHV1-45A0A0A0MS14 117 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 A0A0A6YYC8 382 aaPredicted RBP13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 CCDC188H7C350 402 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 I3L1I5 382 aaPredicted RBP13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 CDK2AP1O14519 115 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 ALOX12BO75342 701 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 PRR35P0CG20 571 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 C8orf89P0DMQ9 161 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 SOX11P35716 441 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 HIF1AQ16665 826 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 BBS9Q3SYG4 887 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 C4orf17Q53FE4 359 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 DUPD1Q68J44 220 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 ASPGQ86U10 573 aa13.68□□□□□ -0.22
HMGCS1-203ENST00000507004 AGGF1Q8N302 714 aaeCLIP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms