RNA–Protein interactions for RNA: ENST00000497106.5

USP54-215, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,773 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-215ENST00000497106 ZDHHC12Q96GR4 267 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 LRCH3Q96II8 777 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 RNF145Q96MT1 663 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 INSM2Q96T92 566 aaPredicted RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 KCNH6Q9H252 994 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 FBRSL1Q9HCM7 1045 aaKnown RBP8.08□□□□□ -1.12
USP54-215ENST00000497106 GULP1Q9UBP9 304 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 EPHA6Q9UF33 1036 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ZNF780BQ9Y6R6 833 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 ANAPC1Q9H1A4 1944 aa8.08□□□□□ -1.12
USP54-215ENST00000497106 SERTM1A2A2V5 107 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 NDUFS4O43181 175 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 CLEC3AO75596 197 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PSMG1O95456 288 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 IL9P15248 144 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ITGAXP20702 1163 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PPP2CBP62714 309 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PPP2CAP67775 309 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SLC34A1Q06495 639 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 VPS26BQ4G0F5 336 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 NOXRED1Q6NXP6 359 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 BLOC1S3Q6QNY0 202 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ZNF621Q6ZSS3 439 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 VRK3Q8IV63 474 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TMEM151AQ8N4L1 468 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 OR4E2Q8NGC2 313 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 OR52E1Q8NGJ3 308 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 DUSP26Q9BV47 211 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 BRINP2Q9C0B6 783 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 RNPEPL1Q9HAU8 725 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SUCOQ9UBS9 1254 aaKnown RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 ATP6V1HQ9UI12 483 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ADAM29Q9UKF5 820 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PADI4Q9UM07 663 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 CFAP20Q9Y6A4 193 aaKnown RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 E7EQ34 232 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 CEACAM5P06731 702 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SYPP08247 313 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 CHRNB1P11230 501 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 AHRP35869 848 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 KCNC1P48547 511 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 MRPL19P49406 292 aaKnown RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 SLC7A2P52569 658 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TIAL1Q01085 375 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP54-215ENST00000497106 TRIM73Q86UV7 250 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 EFCAB3Q8N7B9 438 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TMEM145Q8NBT3 493 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ICA1LQ8NDH6 482 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 FAM13CQ8NE31 585 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TBCDQ9BTW9 1192 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 DUSP23Q9BVJ7 150 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SPATA9Q9BWV2 254 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SGPP1Q9BX95 441 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 C20orf27Q9GZN8 174 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 AURKCQ9UQB9 309 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ANGPT4Q9Y264 503 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 A0A1B0GTW7 788 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 METTL12A8MUP2 240 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PDE9AO76083 593 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SCELO95171 688 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 G6PDP11413 515 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 CDH2P19022 906 aaPredicted RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 XKR7Q5GH72 579 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ATAD3BQ5T9A4 648 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ABRAXAS1Q6UWZ7 409 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 OR8J3Q8NGG0 315 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 OR4A15Q8NGL6 344 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 USP7Q93009 1102 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ZBED6CLQ96FA7 236 aaPredicted RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 C3orf14Q9HBI5 128 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ADPRHL2Q9NX46 363 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 MS4A12Q9NXJ0 267 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 CIDEBQ9UHD4 219 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PLAGL1Q9UM63 463 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 HELZP42694 1942 aaKnown RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 E7ENX8 843 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TCN1P20061 433 aaPredicted RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 TAS2R38P59533 333 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PFN3P60673 137 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 REEP5Q00765 189 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TAP2Q03519 686 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 KPNB1Q14974 876 aaKnown RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 C18orf21Q32NC0 220 aaPredicted RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 FAM174BQ3ZCQ3 159 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.07□□□□□ -1.12
USP54-215ENST00000497106 KHDC1Q4VXA5 237 aaKnown RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 FBXW10Q5XX13 1052 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SUSD1Q6UWL2 747 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 TMEM92Q6UXU6 159 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 ASPGQ86U10 573 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SFRP1Q8N474 314 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 C2orf73Q8N5S3 287 aaPredicted RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 CEP76Q8TAP6 659 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SPATA5L1Q9BVQ7 753 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 SLC6A17Q9H1V8 727 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 C6orf106Q9H6K1 298 aaPredicted RBP8.07□□□□□ -1.12
USP54-215ENST00000497106 SYNDIG1Q9H7V2 258 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 NEUROD4Q9HD90 331 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 PRDM8Q9NQV8 689 aa8.07□□□□□ -1.12
USP54-215ENST00000497106 C6orf203Q9P0P8 240 aaPredicted RBP8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.9 ms