RNA–Protein interactions for RNA: ENST00000489868.5

CCDC39-206, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 534 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-206ENST00000489868 RBMS1P29558 406 aaKnown RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 HSPA4P34932 840 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 RAD23AP54725 363 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 MTCP1P56278 107 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 ILF2Q12905 390 aaKnown RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 OPCMLQ14982 345 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 FASTKD3Q14CZ7 662 aaKnown RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 TAB1Q15750 504 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 MOGAT2Q3SYC2 334 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 TCP11X2Q5H9J9 407 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 CTR9Q6PD62 1173 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 RYBPQ8N488 228 aaPredicted RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 FAM222BQ8WU58 562 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 TSACCQ96A04 125 aaPredicted RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 FER1L6-AS2Q96M78 137 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 OVOL2Q9BRP0 275 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 SLC25A23Q9BV35 468 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 LRRC61Q9BV99 259 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 TDRD1Q9BXT4 1180 aaKnown RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 UBXN6Q9BZV1 441 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 NYXQ9GZU5 481 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 ACTL8Q9H568 366 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 RABEP2Q9H5N1 569 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 MED20Q9H944 212 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 XAB2Q9HCS7 855 aaKnown RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 CCDC177Q9NQR7 707 aaPredicted RBP4.31□□□□□ -1.72
CCDC39-206ENST00000489868 PRDM4Q9UKN5 801 aa4.31□□□□□ -1.72
CCDC39-206ENST00000489868 IGSF1Q8N6C5 1336 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 IGHV3OR16-10A0A075B7F0 116 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 G3V2L1 256 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 CD59P13987 128 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 GATA1P15976 413 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-206ENST00000489868 GATA2P23769 480 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-206ENST00000489868 OR1D5P58170 312 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 IRX4P78413 519 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 SRSF9Q13242 221 aaKnown RBP eCLIP4.3□□□□□ -1.72
CCDC39-206ENST00000489868 KRT71Q3SY84 523 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 FRRS1Q6ZNA5 592 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 GPRIN3Q6ZVF9 776 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 SLC24A5Q71RS6 500 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 FCRLAQ7L513 359 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 RCOR2Q8IZ40 523 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 FAM89BQ8N5H3 189 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 CCDC89Q8N998 374 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 NUP37Q8NFH4 326 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 METTL21AQ8WXB1 218 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 CDCA3Q99618 268 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-206ENST00000489868 DNAI2Q9GZS0 605 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 OR10A4Q9H209 315 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 FN3KQ9H479 309 aa4.3□□□□□ -1.72
CCDC39-206ENST00000489868 NFKBIL1Q9UBC1 381 aaPredicted RBP4.3□□□□□ -1.72
CCDC39-206ENST00000489868 MYH14Q7Z406 1995 aaKnown RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 C17orf105B2RV13 164 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 NPIPB9F8W1W9 429 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 ECE2O60344 883 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 RECQL5O94762 991 aaPredicted RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 PENKP01210 267 aaPredicted RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 ERCC2P18074 760 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 ACAT1P24752 427 aaKnown RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 ELAVL4P26378 380 aaKnown RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 TSFMP43897 325 aaKnown RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 GMPSP49915 693 aaPredicted RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 ZNF273Q14593 569 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 SLC1A5Q15758 541 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 TCTEX1D4Q5JR98 221 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 C1orf141Q5JVX7 400 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 SUSD1Q6UWL2 747 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 CPEB2Q7Z5Q1 589 aaKnown RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 APCDD1Q8J025 514 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 GPC2Q8N158 579 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 MIPOL1Q8TD10 442 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 PYCR2Q96C36 320 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 HOXD1Q9GZZ0 328 aa4.29□□□□□ -1.72
CCDC39-206ENST00000489868 TEX10Q9NXF1 929 aaPredicted RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 COL2A1P02458 1487 aaPredicted RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 TDRD15B5MCY1 1934 aaKnown RBP4.29□□□□□ -1.72
CCDC39-206ENST00000489868 A0A1W2PPR1 153 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 TLX2O43763 284 aaPredicted RBP4.28□□□□□ -1.72
CCDC39-206ENST00000489868 PRAF2O60831 178 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 CEACAM4O75871 244 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 SELEP16581 610 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 SHC1P29353 583 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 EEF1DP29692 281 aaKnown RBP4.28□□□□□ -1.72
CCDC39-206ENST00000489868 HSD17B3P37058 310 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 TMEM50BP56557 158 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 DCDC1P59894 354 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 KCTD2Q14681 263 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 TAZQ16635 292 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 CYB5D1Q6P9G0 228 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 CHST3Q7LGC8 479 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 Q8N377 158 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 ATXN7L3BQ96GX2 97 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 RMDN2Q96LZ7 410 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 SDCBP2Q9H190 292 aa4.28□□□□□ -1.72
CCDC39-206ENST00000489868 RIMS4Q9H426 269 aaPredicted RBP4.28□□□□□ -1.72
CCDC39-206ENST00000489868 CHCHD3Q9NX63 227 aaKnown RBP4.28□□□□□ -1.72
CCDC39-206ENST00000489868 ELF5Q9UKW6 265 aaPredicted RBP4.28□□□□□ -1.72
CCDC39-206ENST00000489868 COL5A2P05997 1499 aaPredicted RBP4.27□□□□□ -1.73
CCDC39-206ENST00000489868 CCDC175P0C221 793 aa4.27□□□□□ -1.73
CCDC39-206ENST00000489868 PRKAR1AP10644 381 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms