RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ENO3	P13929	434 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	XRCC1	P18887	633 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	KRT15	P19012	456 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	HIST1H2AD	P20671	130 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	CD9	P21926	228 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	GABRB3	P28472	473 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	DCT	P40126	519 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	INPP5J	Q15735	1006 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	CTSL3P	Q5NE16	218 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	PWWP2B	Q6NUJ5	590 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ABRAXAS1	Q6UWZ7	409 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	NAPRT	Q6XQN6	538 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520		Q6ZS46	218 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	MICALCL	Q6ZW33	695 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	MAMDC2	Q7Z304	686 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	CCDC91	Q7Z6B0	441 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	C11orf96	Q7Z7L8	435 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	TBC1D1	Q86TI0	1168 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	SIDT2	Q8NBJ9	832 aa	Known RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ZFPM2	Q8WW38	1151 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	SLC44A1	Q8WWI5	657 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	TFG	Q92734	400 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	MTBP	Q96DY7	904 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	HIST1H2AH	Q96KK5	128 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	PAFAH2	Q99487	392 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	HIST1H2AJ	Q99878	128 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	H2AFJ	Q9BTM1	129 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	TXLNGY	Q9BZA5	131 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ING2	Q9H160	280 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	PLAC1	Q9HBJ0	212 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	SMYD2	Q9NRG4	433 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	IMP3	Q9NV31	184 aa	Known RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	8.42	□□□□□ -1.06
USP4-213	ENST00000488520	FETUB	Q9UGM5	382 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF180	Q9UJW8	692 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ASF1A	Q9Y294	204 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	MED13L	Q71F56	2210 aa		8.42	□□□□□ -1.06
USP4-213	ENST00000488520	ABCA12	Q86UK0	2595 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PCNX1	Q96RV3	2341 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520		A0A087X1B8	175 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	IGHV5-51	A0A0C4DH38	117 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SLC5A10	A0PJK1	596 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520		A6NL46	340 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SMIM23	A6NLE4	172 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	EIF3F	O00303	357 aa	Predicted RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	CTIF	O43310	598 aa	Known RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SGTA	O43765	313 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	FAM155B	O75949	473 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SORBS2	O94875	1100 aa	Known RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SLCO2B1	O94956	709 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	DDAH2	O95865	285 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	MYZAP	P0CAP1	466 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	EBLN1	P0CF75	366 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	MPC1L	P0DKB6	136 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	FOLR1	P15328	257 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	CYP2A7	P20853	494 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PDHA2	P29803	388 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	CCNF	P41002	786 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PREP	P48147	710 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SERPINB8	P50452	374 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	RAB10	P61026	200 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	RPS15	P62841	145 aa	Known RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	TUBB3	Q13509	450 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	IL10RA	Q13651	578 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	GPR18	Q14330	331 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PLCL1	Q15111	1095 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	RPE65	Q16518	533 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	UGT8	Q16880	541 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	LARP7	Q4G0J3	582 aa	Known RBP eCLIP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	ARMC6	Q6NXE6	501 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	JMJD6	Q6NYC1	403 aa	Predicted RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	KLC3	Q6P597	504 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	ZNF549	Q6P9A3	640 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	KLHL35	Q6PF15	583 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	ACAD11	Q709F0	780 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SRRM1	Q8IYB3	904 aa	Known RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PHC3	Q8NDX5	983 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	MCOLN3	Q8TDD5	553 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	EEF1AKMT1	Q8WVE0	214 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	KLHL6	Q8WZ60	621 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	C19orf60	Q96EN9	201 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	CABS1	Q96KC9	395 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	CITED4	Q96RK1	184 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	GPR22	Q99680	433 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	BHLHE41	Q9C0J9	482 aa	Predicted RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	CENPH	Q9H3R5	247 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	MVB12B	Q9H7P6	319 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	POPDC3	Q9HBV1	291 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PDE7B	Q9NP56	450 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SLAMF7	Q9NQ25	335 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SLC17A6	Q9P2U8	582 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	TBK1	Q9UHD2	729 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	ERRFI1	Q9UJM3	462 aa	Predicted RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	RARRES3	Q9UL19	164 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	SRPK3	Q9UPE1	567 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	TDRKH	Q9Y2W6	561 aa	Known RBP	8.41	□□□□□ -1.06
USP4-213	ENST00000488520	ACOT9	Q9Y305	439 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	PSAT1	Q9Y617	370 aa		8.41	□□□□□ -1.06
USP4-213	ENST00000488520	C21orf140	B9A014	251 aa		8.4	□□□□□ -1.06
USP4-213	ENST00000488520	TOX3	O15405	576 aa	Predicted RBP	8.4	□□□□□ -1.06

Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms