RNA–Protein interactions for RNA: ENST00000487284.2

CUX1-209, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 1,566 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-209ENST00000487284 CLCA4Q14CN2 919 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 CCDC6Q16204 474 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 UAP1L1Q3KQV9 507 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 TRIM61Q5EBN2 209 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 PIGGQ5H8A4 983 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 C10orf62Q5T681 223 aaPredicted RBP13.67□□□□□ -0.22
CUX1-209ENST00000487284 SUSD1Q6UWL2 747 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 RIPOR1Q6ZS17 1223 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 TAF8Q7Z7C8 310 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 ZNF548Q8NEK5 533 aaPredicted RBP13.67□□□□□ -0.22
CUX1-209ENST00000487284 CEP76Q8TAP6 659 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 SLC5A11Q8WWX8 675 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 LOXL4Q96JB6 756 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 FCRL1Q96LA6 429 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 HAUS8Q9BT25 410 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 ARRDC1-AS1Q9H2J1 176 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 SMOC1Q9H4F8 434 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 ERVMER34-1Q9H9K5 563 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 BRF2Q9HAW0 419 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 CAPN10Q9HC96 672 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 SCHIP1Q9P0W5 487 aaPredicted RBP13.67□□□□□ -0.22
CUX1-209ENST00000487284 MAP10Q9P2G4 905 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 RAB23Q9ULC3 237 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 PLAGL1Q9UM63 463 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 RALGAPA1Q6GYQ0 2036 aa13.67□□□□□ -0.22
CUX1-209ENST00000487284 A6NCN8 305 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 OR52A4PA6NMU1 304 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 EEDO75530 441 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 VARSP26640 1264 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 VPS26BQ4G0F5 336 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PAGE2BQ5JRK9 111 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 CATSPEREQ5SY80 951 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 CACHD1Q5VU97 1274 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 C1orf146Q5VVC0 180 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 MED27Q6P2C8 311 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 NXPE4Q6UWF7 544 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 RABEPKQ7Z6M1 372 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 HPS6Q86YV9 775 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 LAS2Q8IYD9 372 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 LMNTD1Q8N9Z9 388 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 OR7G3Q8NG95 312 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 LMX1AQ8TE12 382 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 REPS1Q96D71 796 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 METTL2AQ96IZ6 378 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 CAMK1GQ96NX5 476 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 CDRT15Q96T59 188 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 ELF4Q99607 663 aaPredicted RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 MVB12BQ9H7P6 319 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 RNPEPL1Q9HAU8 725 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 TAAR2Q9P1P5 351 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 SPASTQ9UBP0 616 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PCOLCE2Q9UKZ9 415 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 SLC6A14Q9UN76 642 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 POMPQ9Y244 141 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 TMED5Q9Y3A6 229 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 FXYD1O00168 92 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PIAS2O75928 621 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 LMNAP02545 664 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 PRPS2P11908 318 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 BCKDHAP12694 445 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 F3P13726 295 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 MAPK1P28482 360 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 BNIP3Q12983 259 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 LAPTM5Q13571 262 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 TSTA3Q13630 321 aaPredicted RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 CEACAM7Q14002 265 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PTGR1Q14914 329 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 ELOCQ15369 112 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 TLR1Q15399 786 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 ZNF423Q2M1K9 1284 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 SLC23A3Q6PIS1 610 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 ABRAXAS1Q6UWZ7 409 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 WASH2PQ6VEQ5 465 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 SFTPA2Q8IWL1 248 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 FAM9CQ8IZT9 166 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 LIX1Q8N485 282 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 RAB42Q8N4Z0 105 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 ENDOVQ8N8Q3 282 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 PATE1Q8WXA2 126 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 SMPDL3AQ92484 453 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 FERD3LQ96RJ6 166 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PRRX2Q99811 253 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 GPATCH1Q9BRR8 931 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 RAB11FIP5Q9BXF6 653 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PCBD2Q9H0N5 130 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 WASH6PQ9NQA3 447 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 IMP3Q9NV31 184 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 UCKL1Q9NWZ5 548 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 GEMIN8Q9NWZ8 242 aaKnown RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 LEF1Q9UJU2 399 aaPredicted RBP13.66□□□□□ -0.22
CUX1-209ENST00000487284 CROTQ9UKG9 612 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 TSC22D4Q9Y3Q8 395 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 PCDHGA5Q9Y5G8 931 aa13.66□□□□□ -0.22
CUX1-209ENST00000487284 MDC1Q14676 2089 aaKnown RBP13.65□□□□□ -0.22
CUX1-209ENST00000487284 A0A1W2PPV9 198 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 PIPSLA2A3N6 862 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 CCDC154A6NI56 674 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 CFLARO15519 480 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 AQP9O43315 295 aa13.65□□□□□ -0.22
CUX1-209ENST00000487284 SORBS2O94875 1100 aaKnown RBP13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms