RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 FARSAQ9Y285 508 aaKnown RBP14.1□□□□□ -0.15
USP4-212ENST00000486549 PCDHGA6Q9Y5G7 932 aa14.1□□□□□ -0.15
USP4-212ENST00000486549 V9GYY5 206 aaPredicted RBP14.1□□□□□ -0.15
USP4-212ENST00000486549 CCDC88CQ9P219 2028 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 SUPT3HB4E1H0 165 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 TRIM49D1C9J1S8 452 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 DSCR3O14972 297 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 P2RX6O15547 441 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 SUPT3HO75486 399 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 CREG1O75629 220 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 MED26O95402 600 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 TNFRSF8P28908 595 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 PTPN4P29074 926 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 GCGRP47871 477 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 CCR8P51685 355 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 RPS15AP62244 130 aaKnown RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 DCDP81605 110 aaKnown RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 MC1RQ01726 317 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 SLC29A2Q14542 456 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 NCF4Q15080 339 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 FAM83EQ2M2I3 478 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 FAM214AQ32MH5 1076 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 NKAIN1Q4KMZ8 207 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 CATSPEREQ5SY80 951 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 TMPRSS11BQ86T26 416 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 ZNF843Q8N446 348 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 EIF1ADQ8N9N8 165 aaKnown RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 STAG3L4Q8TBR4 150 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 UBLCP1Q8WVY7 318 aaPredicted RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 ZDHHC19Q8WVZ1 309 aaPredicted RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 SLC5A11Q8WWX8 675 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 EXTL1Q92935 676 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 NEIL2Q969S2 332 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 ESAMQ96AP7 390 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 CATSPER2Q96P56 530 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 TMEM79Q9BSE2 394 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 GPR87Q9BY21 358 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 IFT80Q9P2H3 777 aaPredicted RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 ZNF180Q9UJW8 692 aa14.09□□□□□ -0.15
USP4-212ENST00000486549 RUVBL1Q9Y265 456 aaKnown RBP14.09□□□□□ -0.15
USP4-212ENST00000486549 FITM1A5D6W6 292 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 UBXN8O00124 270 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 TAPBPO15533 448 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 KERAO60938 352 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 KLHL2O95198 593 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 CAPN1P07384 714 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 RAB40ALP0C0E4 278 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 CNTFP26441 200 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 GRK3P35626 688 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 SLC26A3P40879 764 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 BCL6P41182 706 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 OR1D4P47884 311 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 SLC6A12P48065 614 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 KCNC1P48547 511 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 HSPA7P48741 367 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 CSRP3P50461 194 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 YOD1Q5VVQ6 348 aaPredicted RBP14.08□□□□□ -0.16
USP4-212ENST00000486549 SULT1C3Q6IMI6 304 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 CCDC91Q7Z6B0 441 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 ISCA2Q86U28 154 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 TCAIMQ8N3R3 496 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 C10orf90Q96M02 699 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 MACROD1Q9BQ69 325 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 NLNQ9BYT8 704 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 SPNS1Q9H2V7 528 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 EPB41L4BQ9H329 900 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 NUDT4Q9NZJ9 180 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 MAU2Q9Y6X3 613 aa14.08□□□□□ -0.16
USP4-212ENST00000486549 LCMT2O60294 686 aaKnown RBP14.07□□□□□ -0.16
USP4-212ENST00000486549 CCNT2O60583 730 aaKnown RBP14.07□□□□□ -0.16
USP4-212ENST00000486549 PRB1P04280 392 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 FURINP09958 794 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 ITGAXP20702 1163 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 GCAP28676 217 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 MAGEA12P43365 314 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 FOXL2P58012 376 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 VSNL1P62760 191 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 RELAQ04206 551 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 IL10RAQ13651 578 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 TBR1Q16650 682 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 MUM1Q2TAK8 710 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 PRTGQ2VWP7 1150 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 DEFB109BQ30KR1 87 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 KLC3Q6P597 504 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 PCSK4Q6UW60 755 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 VN1R4Q7Z5H5 301 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 SYVN1Q86TM6 617 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 PLD6Q8N2A8 252 aaKnown RBP14.07□□□□□ -0.16
USP4-212ENST00000486549 SNX31Q8N9S9 440 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 PDPRQ8NCN5 879 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 ABHD11Q8NFV4 315 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 COL26A1Q96A83 441 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 ATOH8Q96SQ7 321 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 C17orf62Q9BQA9 187 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 DHRS4Q9BTZ2 278 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 CNOT10Q9H9A5 744 aaKnown RBP14.07□□□□□ -0.16
USP4-212ENST00000486549 PELI2Q9HAT8 420 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 DNAJC11Q9NVH1 559 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 TCFL5Q9UL49 500 aa14.07□□□□□ -0.16
USP4-212ENST00000486549 PADI2Q9Y2J8 665 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms