RNA–Protein interactions for RNA: ENST00000483506.1

HDAC6-225, Transcript of histone deacetylase 6, humanhuman

TSL 4

Gene HDAC6, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-225ENST00000483506 IGSF5Q9NSI5 407 aa17.17■□□□□ 0.34
HDAC6-225ENST00000483506 IFT80Q9P2H3 777 aaPredicted RBP17.17■□□□□ 0.34
HDAC6-225ENST00000483506 ZNF180Q9UJW8 692 aa17.17■□□□□ 0.34
HDAC6-225ENST00000483506 RUVBL1Q9Y265 456 aaKnown RBP17.17■□□□□ 0.34
HDAC6-225ENST00000483506 BOD1L1Q8NFC6 3051 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 A0A087WUV0 522 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 A0A087X1B8 175 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 CDC14CA4D256 554 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 P2RX6O15547 441 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 CNOT3O75175 753 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 ALDOAP04075 364 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 EIF2S1P05198 315 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 LTA4HP09960 611 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 ALAS2P22557 587 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 MAGEA12P43365 314 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 CCR10P46092 362 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 CCR8P51685 355 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 BMPR2Q13873 1038 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 HKDC1Q2TB90 917 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 DEFB109BQ30KR1 87 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 RAPH1Q70E73 1250 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 OVCH1Q7RTY7 1134 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 TBC1D1Q86TI0 1168 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 ISCA2Q86U28 154 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 THOC6Q86W42 341 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 GPSM1Q86YR5 675 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 PLD3Q8IV08 490 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 CENPLQ8N0S6 344 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 OR2Y1Q8NGV0 311 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 APOBEC4Q8WW27 367 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 SLC5A11Q8WWX8 675 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 NEIL2Q969S2 332 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 ALKBH8Q96BT7 664 aaKnown RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 TM4SF19Q96DZ7 209 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 PAFAH2Q99487 392 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 EGFL8Q99944 293 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 NMRAL1Q9HBL8 299 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 NDOR1Q9UHB4 597 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 GPN3Q9UHW5 284 aaPredicted RBP17.16■□□□□ 0.34
HDAC6-225ENST00000483506 TUBD1Q9UJT1 453 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 ACOT9Q9Y305 439 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 KCNMB2Q9Y691 235 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 CCDC88CQ9P219 2028 aa17.16■□□□□ 0.34
HDAC6-225ENST00000483506 IPO13O94829 963 aaKnown RBP17.15■□□□□ 0.34
HDAC6-225ENST00000483506 C2P06681 752 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 INHBAP08476 426 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 TNFRSF8P28908 595 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 GRK3P35626 688 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 GMPRP36959 345 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 BCL6P41182 706 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 SERPINB8P50452 374 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 SERPINB9P50453 376 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 PMS2P54278 862 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 POLE2P56282 527 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 FAM53BQ14153 422 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 MLIPQ5VWP3 458 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 SULT1C3Q6IMI6 304 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 APLFQ8IW19 511 aaPredicted RBP17.15■□□□□ 0.34
HDAC6-225ENST00000483506 MFSD9Q8NBP5 474 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 STAG3L4Q8TBR4 150 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 MRRFQ96E11 262 aaKnown RBP17.15■□□□□ 0.34
HDAC6-225ENST00000483506 CABS1Q96KC9 395 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 ATOH8Q96SQ7 321 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 TMEM79Q9BSE2 394 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 PELI2Q9HAT8 420 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 GEMIN8Q9NWZ8 242 aaKnown RBP17.15■□□□□ 0.34
HDAC6-225ENST00000483506 SLC22A14Q9Y267 594 aa17.15■□□□□ 0.34
HDAC6-225ENST00000483506 TRBC2A0A5B9 178 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 VSTM2BA6NLU5 285 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 TAPBPO15533 448 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 RIPK2O43353 540 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 KERAO60938 352 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 FAM153BP0C7A2 387 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 FAM87AP0C7U9 286 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 SFTPCP11686 197 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 TFEBP19484 476 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 CNTFP26441 200 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 KCNC1P48547 511 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 REEP5Q00765 189 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 LY6DQ14210 128 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 SSPNQ14714 243 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 UAP1Q16222 522 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-225ENST00000483506 FAM153CQ494X1 144 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 FAM69BQ5VUD6 431 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 TAOK1Q7L7X3 1001 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 DTWD1Q8N5C7 304 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 RHEBL1Q8TAI7 183 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 DCAKDQ8WVC6 231 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 ZDHHC19Q8WVZ1 309 aaPredicted RBP17.14■□□□□ 0.33
HDAC6-225ENST00000483506 SPSB2Q99619 263 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 ARHGAP9Q9BRR9 750 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 SEMA4CQ9C0C4 833 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 CNOT10Q9H9A5 744 aaKnown RBP17.14■□□□□ 0.33
HDAC6-225ENST00000483506 ZNF304Q9HCX3 659 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 NUDT4Q9NZJ9 180 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 PTBP2Q9UKA9 531 aaKnown RBP17.14■□□□□ 0.33
HDAC6-225ENST00000483506 NXT1Q9UKK6 140 aaKnown RBP17.14■□□□□ 0.33
HDAC6-225ENST00000483506 RNF112Q9ULX5 631 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 CDC14AQ9UNH5 594 aa17.14■□□□□ 0.33
HDAC6-225ENST00000483506 MAN2B2Q9Y2E5 1009 aa17.14■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms