RNA–Protein interactions for RNA: ENST00000482879.5

SDC1-206, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 558 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-206ENST00000482879 CPSF6Q16630 551 aaKnown RBP eCLIP11.74□□□□□ -0.53
SDC1-206ENST00000482879 PAGE2BQ5JRK9 111 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 CDCP2Q5VXM1 449 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 GRHL2Q6ISB3 625 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 LETMD1Q6P1Q0 360 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 FBXO42Q6P3S6 717 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 CUZD1Q86UP6 607 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 KMT5CQ86Y97 462 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 PLD3Q8IV08 490 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 TBC1D19Q8N5T2 526 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 L3MBTL4Q8NA19 623 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 RCBTB1Q8NDN9 531 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 ZNF740Q8NDX6 193 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 AGAP11Q8TF27 550 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 GRAMD1AQ96CP6 724 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 SLC41A2Q96JW4 573 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 MAGEB10Q96LZ2 347 aaPredicted RBP11.74□□□□□ -0.53
SDC1-206ENST00000482879 SPNS1Q9H2V7 528 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 ZNF768Q9H5H4 540 aaKnown RBP11.74□□□□□ -0.53
SDC1-206ENST00000482879 FAM60AQ9NP50 221 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 THAP1Q9NVV9 213 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 ZNF225Q9UK10 706 aa11.74□□□□□ -0.53
SDC1-206ENST00000482879 A0A0J9YVX5 310 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 TRBC2A0A5B9 178 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 TMX2-CTNND1H3BSU7 103 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 OR1F1O43749 312 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 LCMT2O60294 686 aaKnown RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 CTSVO60911 334 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 CRCPO75575 148 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ENO1P06733 434 aaKnown RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 HGFP14210 728 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 JUPP14923 745 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 EZRP15311 586 aaKnown RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 NELFEP18615 380 aaKnown RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 CCKBRP32239 447 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 CSTF2P33240 577 aaKnown RBP eCLIP11.73□□□□□ -0.53
SDC1-206ENST00000482879 PDX1P52945 283 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 GYS2P54840 703 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ADAMTS20P59510 1910 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 RELAQ04206 551 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 CYP4F3Q08477 520 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ZRSR2Q15696 482 aaKnown RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 GGTA1PQ4G0N0 100 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ZC3H12BQ5HYM0 836 aaKnown RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 TMTC4Q5T4D3 741 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 HES3Q5TGS1 186 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 TTC19Q6DKK2 380 aaPredicted RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 MED27Q6P2C8 311 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 TMIGD1Q6UXZ0 262 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ATG14Q6ZNE5 492 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 D2HGDHQ8N465 521 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 DNAJC22Q8N4W6 341 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 CDYL2Q8N8U2 506 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 METTL6Q8TCB7 284 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 UBE2E3Q969T4 207 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 DEPDC7Q96QD5 511 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ZFYVE21Q9BQ24 234 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 C20orf27Q9GZN8 174 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 PITHD1Q9GZP4 211 aaPredicted RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 CHRNA10Q9GZZ6 450 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ILKAPQ9H0C8 392 aaPredicted RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 NT5DC2Q9H857 520 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 PRM3Q9NNZ6 103 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 TRPS1Q9UHF7 1281 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 PILRAQ9UKJ1 303 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 ZNF490Q9ULM2 529 aaPredicted RBP11.73□□□□□ -0.53
SDC1-206ENST00000482879 BTRCQ9Y297 605 aa11.73□□□□□ -0.53
SDC1-206ENST00000482879 SCN3AQ9NY46 2000 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 KCNE1BA0A087WTH5 132 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 FFAR3O14843 346 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 AZIN1O14977 448 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 GPR42O15529 346 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SNNO75324 88 aaPredicted RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 CSO75390 466 aaKnown RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 SNUPNO95149 360 aaKnown RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 CAPN1P07384 714 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 PCNAP12004 261 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 HMOX2P30519 316 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 BCL6P41182 706 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SCTRP47872 440 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 RPS15AP62244 130 aaKnown RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 OCRLQ01968 901 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 KCNAB1Q14722 419 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 C16orf72Q14CZ0 275 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 ISXQ2M1V0 245 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SH2D4BQ5SQS7 431 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 RNF44Q7L0R7 432 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 MCATQ8IVS2 390 aaKnown RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 MFSD9Q8NBP5 474 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 AGBL5Q8NDL9 886 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 AGR3Q8TD06 166 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 N4BP2L2Q92802 583 aaPredicted RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 REPS1Q96D71 796 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 THAP11Q96EK4 314 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 PRR11Q96HE9 360 aaPredicted RBP11.72□□□□□ -0.53
SDC1-206ENST00000482879 FCRL4Q96PJ5 515 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 KCNA7Q96RP8 456 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SORT1Q99523 831 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SARGQ9BW04 601 aa11.72□□□□□ -0.53
SDC1-206ENST00000482879 SLC29A3Q9BZD2 475 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms