RNA–Protein interactions for RNA: ENST00000478746.1

VIM-204, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 757 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-204ENST00000478746 A0A0U1RQJ8 604 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 SOWAHDA6NJG2 315 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 PRMT5O14744 637 aaPredicted RBP16.21■□□□□ 0.19
VIM-204ENST00000478746 KPNA5O15131 536 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 PKMP14618 531 aaKnown RBP16.21■□□□□ 0.19
VIM-204ENST00000478746 IGFBP2P18065 325 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 DNAJA1P31689 397 aaKnown RBP16.21■□□□□ 0.19
VIM-204ENST00000478746 PTPN7P35236 360 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 RPA3P35244 121 aaPredicted RBP16.21■□□□□ 0.19
VIM-204ENST00000478746 CETN2P41208 172 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 AVPR1BP47901 424 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 PRAMEP78395 509 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 CDH17Q12864 832 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 MAPKAPK3Q16644 382 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 NDUFA9Q16795 377 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 P3H1Q32P28 736 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 MINDY4Q4G0A6 757 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 C11orf63Q6NUN7 778 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 SUSD1Q6UWL2 747 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 CEP128Q6ZU80 1094 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 OTOAQ7RTW8 1153 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 LDB1Q86U70 411 aaPredicted RBP16.21■□□□□ 0.19
VIM-204ENST00000478746 TMEM200AQ86VY9 491 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 PAQR7Q86WK9 346 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 ARHGEF39Q8N4T4 335 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 M1APQ8TC57 530 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 PANX3Q96QZ0 392 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 NPAS2Q99743 824 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 ZNF559Q9BR84 538 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 RIMKLBQ9ULI2 386 aa16.21■□□□□ 0.19
VIM-204ENST00000478746 HCFC1P51610 2035 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 GABRR3A8MPY1 467 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 CBFA2T2O43439 604 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 MAN1A2O60476 641 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 CYC1P08574 325 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 ADRA1DP25100 572 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 CTNNA1P35221 906 aaKnown RBP16.2■□□□□ 0.18
VIM-204ENST00000478746 IST1P53990 364 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 TSTA3Q13630 321 aaPredicted RBP16.2■□□□□ 0.18
VIM-204ENST00000478746 EXT1Q16394 746 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 AARS2Q5JTZ9 985 aaKnown RBP16.2■□□□□ 0.18
VIM-204ENST00000478746 CES4AQ5XG92 561 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 FGD2Q7Z6J4 655 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 TGIF2LYQ8IUE0 185 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 ASB5Q8WWX0 329 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 SMPDL3AQ92484 453 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 ZNF778Q96MU6 729 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 LRFN1Q9P244 771 aa16.2■□□□□ 0.18
VIM-204ENST00000478746 IGKV1-8A0A0C4DH67 115 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 A0A1B0GTL3 188 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 MFAP3LO75121 409 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 FAM155BO75949 473 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 NEURL1O76050 574 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 ZNF24P17028 368 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 AGTR2P50052 363 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 ACVR1Q04771 509 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 ACTN3Q08043 901 aaPredicted RBP16.19■□□□□ 0.18
VIM-204ENST00000478746 ANKRD20A4Q4UJ75 823 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 RNFT1Q5M7Z0 435 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 TMEM211Q6ICI0 200 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 AADACL2Q6P093 401 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 ANKRD37Q7Z713 158 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 DMRTC2Q8IXT2 367 aaPredicted RBP16.19■□□□□ 0.18
VIM-204ENST00000478746 SLC5A8Q8N695 610 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 CHDHQ8NE62 594 aaPredicted RBP16.19■□□□□ 0.18
VIM-204ENST00000478746 OR9A1PQ8NGU1 263 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 OR9A4Q8NGU2 314 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 LILRB4Q8NHJ6 448 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 MMP25Q9NPA2 562 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 NPDC1Q9NQX5 325 aaPredicted RBP16.19■□□□□ 0.18
VIM-204ENST00000478746 CATSPERZQ9NTU4 200 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 PCYOX1Q9UHG3 505 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 GNPTGQ9UJJ9 305 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 R3HDM2Q9Y2K5 976 aaKnown RBP16.19■□□□□ 0.18
VIM-204ENST00000478746 ACANP16112 2415 aa16.19■□□□□ 0.18
VIM-204ENST00000478746 NKX2-6A6NCS4 301 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 OR2W5A6NFC9 320 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 H0YIG0 161 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 EZRP15311 586 aaKnown RBP16.18■□□□□ 0.18
VIM-204ENST00000478746 PTGS2P35354 604 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 TTPAP49638 278 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 RWDD2BP57060 319 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 PPP2R2AP63151 447 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 RELAQ04206 551 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 PRDX1Q06830 199 aaKnown RBP16.18■□□□□ 0.18
VIM-204ENST00000478746 PTK6Q13882 451 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 ZNF425Q6IV72 752 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 PPP1R21Q6ZMI0 780 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 OR51Q1Q8NH59 317 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 FAM57AQ8TBR7 257 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 MCOLN3Q8TDD5 553 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 NRGNQ92686 78 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 OLFM1Q99784 485 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 FOXC2Q99958 501 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 UCK2Q9BZX2 261 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 P2RY12Q9H244 342 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 CDCP1Q9H5V8 836 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 KCNJ16Q9NPI9 418 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 KCNN3Q9UGI6 736 aa16.18■□□□□ 0.18
VIM-204ENST00000478746 TSR3Q9UJK0 312 aaKnown RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms