RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 OR1N1Q8NGS0 311 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 ACTRT1Q8TDG2 376 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 CCDC138Q96M89 665 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 OR2A5Q96R48 311 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 LMF1Q96S06 567 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 NAT9Q9BTE0 207 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 TRIM54Q9BYV2 358 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 C19orf25Q9UFG5 118 aaPredicted RBP16.65■□□□□ 0.26
COL7A1-206ENST00000466591 TEKT2Q9UIF3 430 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 FLNCQ14315 2725 aa16.65■□□□□ 0.26
COL7A1-206ENST00000466591 RELNP78509 3460 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 IGKV1-8A0A0C4DH67 115 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 GFYI3L273 518 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 C8orf89P0DMQ9 161 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 ICAM2P13598 275 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 CCND1P24385 295 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 IMPA1P29218 277 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 TSFMP43897 325 aaKnown RBP16.64■□□□□ 0.25
COL7A1-206ENST00000466591 BBS9Q3SYG4 887 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 ZNF425Q6IV72 752 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 LAPTM4BQ86VI4 370 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 GPATCH11Q8N954 259 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 CAMKVQ8NCB2 501 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 ST6GALNAC3Q8NDV1 305 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 BRIX1Q8TDN6 353 aaKnown RBP16.64■□□□□ 0.25
COL7A1-206ENST00000466591 GRHL3Q8TE85 626 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 LINGO1Q96FE5 620 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 CFAP36Q96G28 342 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 ANKHQ9HCJ1 492 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 TMEM184CQ9NVA4 438 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 MRPS2Q9Y399 296 aaKnown RBP16.64■□□□□ 0.25
COL7A1-206ENST00000466591 LRRK2Q5S007 2527 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 ESPL1Q14674 2120 aa16.64■□□□□ 0.25
COL7A1-206ENST00000466591 IGLV3-12A0A075B6K2 115 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SERPINA7P05543 415 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SLC35G6P0C7Q6 338 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 PRR35P0CG20 571 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 COX6A1P12074 109 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SLC26A3P40879 764 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 MAT1AQ00266 395 aaKnown RBP16.63■□□□□ 0.25
COL7A1-206ENST00000466591 RELAQ04206 551 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 DHX9Q08211 1270 aaKnown RBP16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SP140Q13342 867 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 FAM53BQ14153 422 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SYT16Q17RD7 645 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 ABHD17BQ5VST6 288 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 ATG9BQ674R7 924 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 HIST2H2BCQ6DN03 193 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 AGTRAPQ6RW13 159 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 PDIK1LQ8N165 341 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 BCORP1Q8N888 145 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 OR9A4Q8NGU2 314 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 ZCCHC10Q8TBK6 192 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 EEF1AKMT1Q8WVE0 214 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SIGLEC10Q96LC7 697 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 DDX47Q9H0S4 455 aaKnown RBP16.63■□□□□ 0.25
COL7A1-206ENST00000466591 ATG10Q9H0Y0 220 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 PARVBQ9HBI1 364 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 OLAHQ9NV23 265 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 TRMT1Q9NXH9 659 aaKnown RBP16.63■□□□□ 0.25
COL7A1-206ENST00000466591 ARL15Q9NXU5 204 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 ERRFI1Q9UJM3 462 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-206ENST00000466591 SNX12Q9UMY4 172 aa16.63■□□□□ 0.25
COL7A1-206ENST00000466591 RP1L1Q8IWN7 2480 aaPredicted RBP16.63■□□□□ 0.25
COL7A1-206ENST00000466591 PCM1Q15154 2024 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 IGHV1-45A0A0A0MS14 117 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 H0YIG0 161 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 DNALI1O14645 258 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 P2RX6O15547 441 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 KLHL18O94889 574 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 BMP10O95393 424 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 SERPIND1P05546 499 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 EDN3P14138 238 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 MAGEA3P43357 314 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 IL2P60568 153 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 SKP1P63208 163 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 Q0VFX4 171 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 NAE1Q13564 534 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 RNASEH2BQ5TBB1 312 aaKnown RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 CAPN13Q6MZZ7 669 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 IGFL2Q6UWQ7 119 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 RIPOR1Q6ZS17 1223 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 MAMDC2Q7Z304 686 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 ASPGQ86U10 573 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 C2CD4AQ8NCU7 369 aaPredicted RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 ANP32BQ92688 251 aaKnown RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 THAP11Q96EK4 314 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 HAUS8Q9BT25 410 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 TGIF2Q9GZN2 237 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 HCN3Q9P1Z3 774 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 OSGIN2Q9Y236 505 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 NTNG1Q9Y2I2 539 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 SHANK1Q9Y566 2161 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 COL12A1Q99715 3063 aa16.62■□□□□ 0.25
COL7A1-206ENST00000466591 SPENQ96T58 3664 aaKnown RBP16.62■□□□□ 0.25
COL7A1-206ENST00000466591 ANKRD12Q6UB98 2062 aa16.61■□□□□ 0.25
COL7A1-206ENST00000466591 TRAV17A0A0B4J275 112 aa16.61■□□□□ 0.25
COL7A1-206ENST00000466591 A8MUI8 341 aa16.61■□□□□ 0.25
COL7A1-206ENST00000466591 SLC16A5O15375 505 aa16.61■□□□□ 0.25
COL7A1-206ENST00000466591 F10P00742 488 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms